View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15074_low_1 (Length: 603)

Name: NF15074_low_1
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15074_low_1
NF15074_low_1
[»] chr6 (16 HSPs)
chr6 (73-590)||(31564316-31564843)
chr6 (1-294)||(33259656-33259959)
chr6 (68-294)||(33385444-33385670)
chr6 (331-495)||(33416366-33416536)
chr6 (4-120)||(33416228-33416345)
chr6 (452-581)||(33385707-33385837)
chr6 (165-271)||(24631864-24631970)
chr6 (3-113)||(24631975-24632086)
chr6 (83-157)||(29274300-29274376)
chr6 (507-566)||(33281320-33281376)
chr6 (98-154)||(9165360-9165418)
chr6 (524-578)||(33416538-33416592)
chr6 (507-566)||(33301947-33302003)
chr6 (188-263)||(281808-281881)
chr6 (1-39)||(33385387-33385425)
chr6 (96-171)||(2034496-2034572)
[»] chr5 (8 HSPs)
chr5 (332-486)||(30653203-30653360)
chr5 (83-205)||(11684346-11684468)
chr5 (159-224)||(30653373-30653438)
chr5 (76-157)||(32059660-32059742)
chr5 (76-120)||(10391269-10391313)
chr5 (213-264)||(11457158-11457209)
chr5 (76-115)||(29115328-29115367)
chr5 (84-120)||(19113227-19113263)
[»] scaffold0428 (2 HSPs)
scaffold0428 (65-294)||(3809-4047)
scaffold0428 (507-566)||(12876-12932)
[»] chr2 (8 HSPs)
chr2 (449-578)||(17443374-17443503)
chr2 (229-294)||(17443537-17443602)
chr2 (76-157)||(34339039-34339122)
chr2 (84-124)||(3102617-3102657)
chr2 (189-266)||(14299588-14299663)
chr2 (96-157)||(7103554-7103615)
chr2 (96-157)||(18962109-18962172)
chr2 (248-300)||(43199930-43199982)
[»] chr8 (11 HSPs)
chr8 (188-266)||(13000381-13000457)
chr8 (81-149)||(26717178-26717246)
chr8 (85-171)||(5290566-5290649)
chr8 (76-139)||(26716527-26716590)
chr8 (188-266)||(30191098-30191174)
chr8 (44-156)||(7026613-7026729)
chr8 (123-209)||(10079082-10079168)
chr8 (160-209)||(30389108-30389157)
chr8 (83-157)||(34788498-34788574)
chr8 (84-120)||(6918955-6918991)
chr8 (87-154)||(8536123-8536191)
[»] chr3 (8 HSPs)
chr3 (188-264)||(43115093-43115167)
chr3 (76-154)||(38462197-38462277)
chr3 (83-156)||(22232749-22232824)
chr3 (67-149)||(3015928-3016011)
chr3 (188-266)||(37273171-37273247)
chr3 (191-287)||(24624250-24624344)
chr3 (84-120)||(16790466-16790502)
chr3 (84-149)||(51278236-51278303)
[»] chr7 (10 HSPs)
chr7 (151-264)||(3468614-3468725)
chr7 (76-157)||(3610811-3610894)
chr7 (43-120)||(22388014-22388093)
chr7 (84-205)||(26935573-26935696)
chr7 (84-149)||(7244626-7244693)
chr7 (76-120)||(23721417-23721461)
chr7 (96-157)||(33894559-33894621)
chr7 (83-156)||(35536030-35536105)
chr7 (188-263)||(39345508-39345581)
chr7 (84-120)||(45078217-45078253)
[»] chr1 (7 HSPs)
chr1 (86-139)||(44207697-44207750)
chr1 (215-266)||(15581316-15581367)
chr1 (76-132)||(11639512-11639568)
chr1 (191-266)||(28837002-28837075)
chr1 (160-204)||(30014095-30014139)
chr1 (101-157)||(44422642-44422698)
chr1 (83-115)||(50764489-50764521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (98-171)||(21335-21410)
[»] chr4 (4 HSPs)
chr4 (85-139)||(32920489-32920543)
chr4 (82-149)||(47970240-47970309)
chr4 (99-169)||(55437345-55437415)
chr4 (189-264)||(9843212-9843285)
[»] scaffold0311 (1 HSPs)
scaffold0311 (188-263)||(10577-10650)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 73 - 590
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  73 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  173 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 272  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  273 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 366  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  367 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  463 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  563 ttcatcttcaacttgtactaccacaggt 590  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 33259656 - 33259959
Alignment:
Q  1 aagaattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaatt-aagcttacaagataaacacttatcataaaattgct 99  Q
    ||||||||||||||| || |  ||||| |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||    
T  33259656 aagaattcaaagatatgtaagaaggctggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgct 33259755  T
Q  100 tatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacgga 190  Q
    ||||||||||||||||||||| |||  |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |    
T  33259756 tatgtataagctatttttataacaaaagataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgta 33259855  T
Q  191 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaata 290  Q
    ||   |||||||||| ||||| ||||||||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||    
T  33259856 aaatggctgaaaacagcttttatggacatgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaata 33259955  T
Q  291 catc 294  Q
    ||||    
T  33259956 catc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 294
Target Start/End: Original strand, 33385444 - 33385670
Alignment:
Q  68 cttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttca 165  Q
    |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||  |||||||||||||||||||  | | |||||||| |||||||    
T  33385444 cttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaagataaaatgaagtcatact--tatgctataagctattttca 33385541  T
Q  166 taagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgc 265  Q
    ||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||  | ||||||||| |||||||| ||||||| ||||||||||    
T  33385542 taagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcatgagctgtttccataaactcttccaaacagtttcacaagtgc 33385641  T
Q  266 taatatgactgtataagttcaaatacatc 294  Q
    | |||| | |  |||||||||||| ||||    
T  33385642 ttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 331 - 495
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  331 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 428  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  429 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 495  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 33416228 - 33416345
Alignment:
Q  4 aattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaatt-aagcttacaagataaacacttatcataaaattgcttat 102  Q
    ||||||||||||||||||||| ||||||||| | ||| | ||||||||||| ||||||||| ||||||| ||||||| | || || || ||| |||||||    
T  33416228 aattcaaagataggtgaacagactagaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttat 33416327  T
Q  103 gtataagctatttttata 120  Q
    ||||||||||||||||||    
T  33416328 gtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 452 - 581
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  452 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 550  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  551 aattgcaacttcttcatcttcaacttgtact 581  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  165 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 264  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  265 ctaatat 271  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 24632086 - 24631975
Alignment:
Q  3 gaattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaatt-aagcttacaagataaacacttatcataaaattgctta 101  Q
    |||||||||||| |||||||| | | |||||||||||| | ||||||||||  ||| ||||| ||  ||| ||||||||| ||||||||| || ||||||    
T  24632086 gaattcaaagattggtgaacaagttggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgctta 24631987  T
Q  102 tgtataagctat 113  Q
    || |||||||||    
T  24631986 tgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  83 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 157  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  507 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 566  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 9165360 - 9165418
Alignment:
Q  98 cttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 154  Q
    ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165360 cttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  524 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 578  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  507 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 566  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 263  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33385387 - 33385425
Alignment:
Q  1 aagaattcaaagataggtgaacaggctagaaaactaaga 39  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  33385387 aagaattcaaagataggtgaacaggctggaaacctaaga 33385425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 2034572 - 2034496
Alignment:
Q  96 tgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttcctataagcgattttcataagct 171  Q
    |||||||||||||||| |||||| | ||| |||||||| |||||| |||  |||| |||||||  ||||||||||||    
T  2034572 tgcttatgtataagctgtttttacaacaaagataaaataaagtcaaactactttcatataagcttttttcataagct 2034496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 332 - 486
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  332 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 431  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  432 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 486  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  83 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 182  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  183 catacggaaataagctgaaaaca 205  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  159 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 224  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 157  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttata 120  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  213 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 264  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctattt 115  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 19113263 - 19113227
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttata 120  Q
    |||||||| |||||||||||||||| |||||||||||    
T  19113263 ttatcatataattgcttatgtataaactatttttata 19113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 294
Target Start/End: Original strand, 3809 - 4047
Alignment:
Q  65 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata-------a 155  Q
    ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||       |    
T  3809 aagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatatgctataa 3908  T
Q  156 gcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtc 255  Q
    || |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| ||||||||    
T  3909 gctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttccaaacagtc 4008  T
Q  256 tcacaagtgctaatatgactgtataagttcaaatacatc 294  Q
    ||||||||||| |||| | | ||||||||||||||||||    
T  4009 tcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 566
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  507 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 566  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 449 - 578
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  449 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 548  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  549 gcaattgcaacttcttcatcttcaacttgt 578  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  229 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 294  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 157  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttatagcaa 124  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  189 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 266  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  96 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 157  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 18962172 - 18962109
Alignment:
Q  96 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 157  Q
    ||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| |||||||    
T  18962172 tgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagc 18962109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  248 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 300  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 266  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  81 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 149  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  85 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 171  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 139  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 266  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 7026613 - 7026729
Alignment:
Q  44 gtttggataaataacctaattaagc--ttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtca 139  Q
    ||||||||||| ||| |||||||||  |||||  ||||||| |||||||| || |||||||| |||||||| | ||||| |  |||||||||| |||| |    
T  7026613 gtttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgcttatgcataagctactgttataacaaaagataaaataaagtaa 7026712  T
Q  140 tactgttttcctataag 156  Q
     | ||||||| ||||||    
T  7026713 aattgttttcatataag 7026729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  123 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 209  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  160 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 209  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  83 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 157  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 6918955 - 6918991
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttata 120  Q
    |||||||| || |||||||||||||||||||||||||    
T  6918955 ttatcatataagtgcttatgtataagctatttttata 6918991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 8536191 - 8536123
Alignment:
Q  87 tcataaaattgcttatgtataagctatttttatagcaagataaaa-tgaagtcatactgttttcctata 154  Q
    ||||| || |||||||||||||||||||| |||| ||| |||||| |||||||| | ||||||| ||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgttttcatata 8536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 264  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 154  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  83 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 156  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  67 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 149  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 266  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  191 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 287  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 16790502 - 16790466
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttata 120  Q
    |||||||| || |||||||||||||||||||||||||    
T  16790502 ttatcatataagtgcttatgtataagctatttttata 16790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 51278303 - 51278236
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttatagcaagata--aaatgaagtcatactgttttc 149  Q
    |||||||| ||||||| ||||||||||||||| |||| ||| |||  |||| |||||| |||||||||    
T  51278303 ttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttc 51278236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  151 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 250  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  251 cagtctcacaagtg 264  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 157  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  43 agtttggataaataacctaattaagc--ttacaagataaacacttatcataaaattgcttatgtataagctatttttata 120  Q
    |||||||||||| ||| |||||||||  ||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 181  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  182 acatacggaaataagctgaaaaca 205  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 7244626 - 7244693
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 149  Q
    |||||||| || |||||||||||||||||||| |||| |  |||||||||  |||||| |||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttc 7244693  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 23721417 - 23721461
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttata 120  Q
    ||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  23721417 ataaacacttatcatcaaagtgcttatgtataaactatttctata 23721461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 33894559 - 33894621
Alignment:
Q  96 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 157  Q
    |||||||||||||||||||| |||| |  |||||||||| |||||| ||||||||| |||||||    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagc 33894621  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 35536030 - 35536105
Alignment:
Q  83 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataag 156  Q
    ||||||||| ||  ||||||||||||||||||| |||| |  |||||||||| |||||| | ||||||| ||||||    
T  35536030 cttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 39345508 - 39345581
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 263  Q
    ||||||||||||||| |||||| ||  ||||||||||    ||||||||| |||||| | ||||||||||||||||    
T  39345508 ggaaataagctgaaagcaacttatg--gacatgtcataaactgtttccatgaactctaccaaacagtctcacaagt 39345581  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 45078217 - 45078253
Alignment:
Q  84 ttatcataaaattgcttatgtataagctatttttata 120  Q
    |||||||| || |||||||||||||||||||||||||    
T  45078217 ttatcatataagtgcttatgtataagctatttttata 45078253  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  86 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 139  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  215 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 266  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 11639568 - 11639512
Alignment:
Q  76 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaat 132  Q
    |||||||||||||||  || | ||||||| ||||||||||||||  |||||||||||    
T  11639568 ataaacacttatcatgtaagtccttatgtgtaagctatttttatgacaagataaaat 11639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 28837075 - 28837002
Alignment:
Q  191 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 266  Q
    ||||||||||||||| ||| ||||  ||||||||| | |||||   |||| ||||| |||||||||||||||||||    
T  28837075 aataagctgaaaacagcttatgtg--catgtcattagctgttttggttaagtcttctaaacagtctcacaagtgct 28837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  160 ttttcataagcttttctagacaacatacggaaataagctgaaaac 204  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 44422642 - 44422698
Alignment:
Q  101 atgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 157  Q
    |||||||||||||||||||| || |||||||| |  ||| ||||||||| |||||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagc 44422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 50764521 - 50764489
Alignment:
Q  83 cttatcataaaattgcttatgtataagctattt 115  Q
    ||||||||| |||||||||||||||||||||||    
T  50764521 cttatcatacaattgcttatgtataagctattt 50764489  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  98 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 171  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  85 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 139  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  82 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 149  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  99 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 169  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 9843285 - 9843212
Alignment:
Q  189 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 264  Q
    |||||||||||||||||||  || |||| |||| ||| ||||||| | | | ||||| ||||||||||||||||||    
T  9843285 gaaataagctgaaaacaac--ttatggatatgtgattagttgttttcttaatctctttgaaacagtctcacaagtg 9843212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 10650 - 10577
Alignment:
Q  188 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 263  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||| | || |   ||||||||||||||||    
T  10650 ggaaataagctgaaaacaac--ttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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