View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_low_10 (Length: 291)
Name: NF15074_low_10
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43147591 - 43147865
Alignment:
| Q |
1 |
aagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctccttttctaacaat |
100 |
Q |
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| T |
43147591 |
aagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctccttttctaacaat |
43147690 |
T |
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| Q |
101 |
attcccctcactttggaagcatggtg-ttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtgttttaaatggtgggagga |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147691 |
attcccctcactttggaagcatggtggttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtgttttaaatggtgggagga |
43147790 |
T |
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| Q |
200 |
atcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcattgt |
274 |
Q |
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| T |
43147791 |
atcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcattgt |
43147865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 105 - 272
Target Start/End: Original strand, 43159051 - 43159224
Alignment:
| Q |
105 |
ccctcactttggaagcatgg-tgttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtg--------ttttaaatggtggg |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| | || || ||||| |||||||| |
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| T |
43159051 |
ccctcactttggaagcatgggtgttggtagatcaaattgatctaatttatt---ctttggtgcattcttgattgattgattgattgttttagatggtggg |
43159147 |
T |
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| Q |
196 |
aggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcatt |
272 |
Q |
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| T |
43159148 |
aggaatcttagttccattttttcattatccattcaatccatattatttttcggtgcaagccttcccatggcttcatt |
43159224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 3507927 - 3507976
Alignment:
| Q |
5 |
attctctcaagcaatagaaattgtacttctatcatacattatctcctcct |
54 |
Q |
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|||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
3507927 |
attctctcaagcaatagaaattgttcttctctcatatattatctcctcct |
3507976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 3640035 - 3640126
Alignment:
| Q |
1 |
aagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctcctttt |
92 |
Q |
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||||||||||||| | |||||||||||| ||||| | | ||| |||||||||||||| ||| ||||| |||||||| |||||||||||| |
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| T |
3640035 |
aagcattctctcacggaatagaaattgtccttctctttaatattctctcctcctcaatttctcccaaaagctcactataacgttctcctttt |
3640126 |
T |
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