View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_low_11 (Length: 282)
Name: NF15074_low_11
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 45153206 - 45153088
Alignment:
| Q |
9 |
gagtgagaagaagaaatggattcaaacaaagtactaatagctctactaacccttgttttgctctttcattactctcttactgaaagtacaacactttctc |
108 |
Q |
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| T |
45153206 |
gagtgaaacgaagaaatggattcaaacaaagtactaatagctctactaacccttgttttgctctttcattactctcttactgaaagtacaacactttctc |
45153107 |
T |
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| Q |
109 |
ataaccatcatagacacct |
127 |
Q |
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| T |
45153106 |
ataaccatcatagacacct |
45153088 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 45153015 - 45152949
Alignment:
| Q |
200 |
cttaaggtgtgacccattttacctatatctatatggatattgtggacagtggccttttcctacttac |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45153015 |
cttaaggtgtgacccattttacctatatctatatggatattgtggacagtggccttttcctacttac |
45152949 |
T |
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