View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_low_14 (Length: 241)
Name: NF15074_low_14
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 9795081 - 9795292
Alignment:
| Q |
17 |
acattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtgatgccaagctacaccttcagctc |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9795081 |
acattcctctccaaagaccaaccataaagaagacttctataaacacaaggtagcactcctttaatcttgtctttgtgatgccaaactacaccttcagctc |
9795180 |
T |
|
| Q |
117 |
tcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9795181 |
tcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaa |
9795280 |
T |
|
| Q |
217 |
tgcttcgtcttc |
228 |
Q |
| |
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|||||||||||| |
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| T |
9795281 |
tgcttcgtcttc |
9795292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 45145954 - 45145743
Alignment:
| Q |
17 |
acattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtgatgccaagctacaccttcagctc |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45145954 |
acattcctctccatagaccaaccataaagaagacttctataaacacaaggtagctctcctttaatcttgtctttgtgatgccaatctacaccttcagctc |
45145855 |
T |
|
| Q |
117 |
tcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145854 |
tcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaa |
45145755 |
T |
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| Q |
217 |
tgcttcgtcttc |
228 |
Q |
| |
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|||||||||||| |
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| T |
45145754 |
tgcttcgtcttc |
45145743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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