View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15074_low_3 (Length: 476)

Name: NF15074_low_3
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15074_low_3
NF15074_low_3
[»] chr3 (44 HSPs)
chr3 (54-441)||(6092997-6093372)
chr3 (214-402)||(44186859-44187041)
chr3 (214-439)||(30766320-30766547)
chr3 (315-434)||(188593-188713)
chr3 (301-461)||(23937256-23937418)
chr3 (315-438)||(37611459-37611583)
chr3 (213-461)||(22759056-22759291)
chr3 (278-357)||(44072773-44072852)
chr3 (286-357)||(918794-918865)
chr3 (240-311)||(35437198-35437269)
chr3 (377-461)||(50771295-50771379)
chr3 (213-311)||(26035813-26035911)
chr3 (214-263)||(188727-188777)
chr3 (241-311)||(36164857-36164927)
chr3 (212-295)||(5240947-5241031)
chr3 (377-457)||(16341781-16341861)
chr3 (377-440)||(11383255-11383318)
chr3 (210-263)||(15315269-15315324)
chr3 (411-461)||(29201547-29201597)
chr3 (214-263)||(39576525-39576575)
chr3 (244-310)||(54792723-54792789)
chr3 (212-263)||(8396757-8396809)
chr3 (212-311)||(12157707-12157807)
chr3 (377-457)||(16496016-16496096)
chr3 (216-263)||(16496368-16496416)
chr3 (377-461)||(50741475-50741558)
chr3 (377-457)||(52853492-52853572)
chr3 (377-457)||(54793013-54793093)
chr3 (212-254)||(22477906-22477949)
chr3 (213-254)||(4137399-4137441)
chr3 (213-254)||(18688674-18688716)
chr3 (213-254)||(35861002-35861044)
chr3 (214-263)||(52843176-52843226)
chr3 (394-440)||(54512921-54512967)
chr3 (214-254)||(19360735-19360776)
chr3 (380-457)||(52462984-52463060)
chr3 (377-457)||(5252422-5252502)
chr3 (394-454)||(31369082-31369142)
chr3 (376-440)||(35436982-35437046)
chr3 (377-457)||(39796521-39796601)
chr3 (377-441)||(48521070-48521134)
chr3 (377-457)||(49113192-49113272)
chr3 (211-254)||(50742296-50742340)
chr3 (377-457)||(55294827-55294907)
[»] chr2 (35 HSPs)
chr2 (213-402)||(32725990-32726180)
chr2 (212-461)||(1691425-1691665)
chr2 (329-438)||(7364648-7364757)
chr2 (245-345)||(24278962-24279062)
chr2 (273-357)||(35357671-35357755)
chr2 (279-357)||(3711054-3711132)
chr2 (279-357)||(11866284-11866362)
chr2 (212-263)||(7364771-7364823)
chr2 (212-282)||(30922096-30922167)
chr2 (329-461)||(7984090-7984225)
chr2 (381-437)||(25282349-25282405)
chr2 (377-457)||(26827662-26827742)
chr2 (377-457)||(33663844-33663924)
chr2 (213-311)||(17026060-17026158)
chr2 (214-310)||(25124044-25124141)
chr2 (377-457)||(17037431-17037511)
chr2 (377-457)||(28380053-28380133)
chr2 (377-457)||(30570600-30570680)
chr2 (377-457)||(30572480-30572560)
chr2 (377-457)||(45205068-45205148)
chr2 (213-263)||(4289027-4289078)
chr2 (377-440)||(33907407-33907470)
chr2 (214-311)||(10820973-10821070)
chr2 (213-254)||(16723661-16723703)
chr2 (241-311)||(17092245-17092315)
chr2 (395-457)||(35286408-35286470)
chr2 (214-254)||(9916707-9916748)
chr2 (376-457)||(14753343-14753424)
chr2 (241-310)||(14753577-14753645)
chr2 (377-457)||(17025754-17025834)
chr2 (210-254)||(28609953-28609998)
chr2 (377-457)||(1515040-1515120)
chr2 (377-457)||(17091939-17092019)
chr2 (377-457)||(18092772-18092852)
chr2 (213-263)||(22374080-22374132)
[»] chr8 (40 HSPs)
chr8 (213-437)||(12660957-12661183)
chr8 (315-438)||(11696962-11697086)
chr8 (213-320)||(27272620-27272728)
chr8 (279-437)||(4634853-4635008)
chr8 (212-311)||(12249910-12250010)
chr8 (212-311)||(23626054-23626154)
chr8 (212-311)||(39445197-39445297)
chr8 (212-310)||(41907954-41908053)
chr8 (212-357)||(44213034-44213180)
chr8 (213-311)||(2961008-2961105)
chr8 (279-357)||(20662985-20663063)
chr8 (279-357)||(30548348-30548426)
chr8 (377-440)||(38993571-38993634)
chr8 (377-440)||(44599590-44599653)
chr8 (214-263)||(11697101-11697151)
chr8 (212-292)||(32569575-32569656)
chr8 (212-311)||(39204807-39204908)
chr8 (377-457)||(22333157-22333237)
chr8 (377-457)||(29433910-29433990)
chr8 (377-457)||(41628762-41628842)
chr8 (213-263)||(18375557-18375608)
chr8 (212-254)||(24055841-24055884)
chr8 (213-263)||(41158635-41158686)
chr8 (210-295)||(8307504-8307590)
chr8 (213-254)||(36778480-36778522)
chr8 (377-463)||(44940307-44940393)
chr8 (396-457)||(6300672-6300733)
chr8 (377-438)||(23522693-23522754)
chr8 (214-254)||(40586443-40586484)
chr8 (377-457)||(6477529-6477609)
chr8 (213-252)||(7391324-7391364)
chr8 (211-254)||(8160417-8160461)
chr8 (211-254)||(8763013-8763057)
chr8 (377-461)||(19247975-19248059)
chr8 (377-461)||(19321159-19321243)
chr8 (241-309)||(21543180-21543247)
chr8 (377-457)||(23966556-23966636)
chr8 (211-254)||(27273878-27273922)
chr8 (377-457)||(37029709-37029789)
chr8 (377-457)||(42810973-42811053)
[»] chr5 (34 HSPs)
chr5 (213-461)||(2366839-2367089)
chr5 (315-438)||(22602699-22602823)
chr5 (315-438)||(36366189-36366313)
chr5 (213-311)||(9702652-9702751)
chr5 (216-330)||(19365869-19365984)
chr5 (213-461)||(38041490-38041729)
chr5 (213-311)||(9809820-9809918)
chr5 (214-311)||(12702061-12702158)
chr5 (212-320)||(32977100-32977209)
chr5 (213-311)||(7863528-7863624)
chr5 (213-335)||(18037229-18037353)
chr5 (377-461)||(35539965-35540049)
chr5 (212-263)||(36366123-36366175)
chr5 (229-311)||(12763092-12763174)
chr5 (213-263)||(22602634-22602685)
chr5 (279-357)||(37464476-37464554)
chr5 (214-263)||(42819330-42819380)
chr5 (377-461)||(3028843-3028927)
chr5 (377-440)||(34374426-34374489)
chr5 (377-440)||(3150650-3150713)
chr5 (213-263)||(8350241-8350292)
chr5 (213-263)||(34719449-34719500)
chr5 (377-440)||(41780938-41781001)
chr5 (214-263)||(25695539-25695589)
chr5 (395-457)||(33929887-33929949)
chr5 (376-457)||(290640-290721)
chr5 (214-254)||(3086433-3086474)
chr5 (377-438)||(20758058-20758119)
chr5 (211-254)||(752053-752097)
chr5 (377-457)||(9702345-9702425)
chr5 (212-263)||(13596910-13596962)
chr5 (377-457)||(19395449-19395529)
chr5 (377-457)||(19448096-19448176)
chr5 (377-457)||(31295720-31295800)
[»] chr4 (45 HSPs)
chr4 (214-461)||(56541557-56541807)
chr4 (315-438)||(33486445-33486569)
chr4 (315-438)||(43014655-43014779)
chr4 (328-438)||(16895818-16895929)
chr4 (213-311)||(26870028-26870127)
chr4 (213-311)||(15650485-15650582)
chr4 (214-311)||(3839095-3839193)
chr4 (279-357)||(10259391-10259469)
chr4 (279-357)||(24077460-24077538)
chr4 (279-357)||(26924330-26924408)
chr4 (279-357)||(43332507-43332585)
chr4 (279-357)||(51452574-51452652)
chr4 (213-332)||(23992319-23992439)
chr4 (212-325)||(19591009-19591124)
chr4 (279-357)||(21564986-21565064)
chr4 (245-343)||(28120217-28120315)
chr4 (214-263)||(43014591-43014641)
chr4 (214-330)||(1975318-1975435)
chr4 (377-457)||(28973208-28973288)
chr4 (210-295)||(29706146-29706233)
chr4 (377-440)||(38008007-38008070)
chr4 (214-263)||(16895941-16895991)
chr4 (212-257)||(17741660-17741706)
chr4 (239-333)||(49711650-49711744)
chr4 (377-457)||(740473-740553)
chr4 (377-457)||(3839428-3839508)
chr4 (377-457)||(7643855-7643935)
chr4 (377-461)||(13628194-13628278)
chr4 (377-457)||(19831460-19831540)
chr4 (211-254)||(23479824-23479868)
chr4 (377-457)||(33503060-33503140)
chr4 (211-254)||(35707655-35707699)
chr4 (213-254)||(2118191-2118233)
chr4 (213-254)||(5759342-5759384)
chr4 (209-254)||(29713824-29713870)
chr4 (214-263)||(39713496-39713546)
chr4 (214-254)||(574177-574218)
chr4 (210-254)||(2777222-2777267)
chr4 (214-254)||(3759280-3759321)
chr4 (214-254)||(12680630-12680671)
chr4 (377-457)||(15520862-15520942)
chr4 (210-238)||(27892640-27892668)
chr4 (211-254)||(37352101-37352145)
chr4 (211-254)||(37357000-37357044)
chr4 (377-457)||(37701662-37701742)
[»] chr6 (32 HSPs)
chr6 (213-461)||(2624721-2624971)
chr6 (216-461)||(22975720-22975967)
chr6 (216-461)||(23812434-23812681)
chr6 (315-438)||(11470837-11470960)
chr6 (213-311)||(1932283-1932382)
chr6 (213-433)||(33300486-33300710)
chr6 (329-438)||(18389232-18389341)
chr6 (212-311)||(33318995-33319092)
chr6 (212-311)||(4425851-4425951)
chr6 (279-357)||(250020-250098)
chr6 (279-357)||(12579844-12579922)
chr6 (214-357)||(33979081-33979226)
chr6 (315-389)||(11272664-11272739)
chr6 (212-263)||(18389166-18389218)
chr6 (267-335)||(3052060-3052128)
chr6 (377-457)||(30044319-30044399)
chr6 (212-303)||(5753125-5753213)
chr6 (226-311)||(8615029-8615112)
chr6 (213-263)||(11272753-11272804)
chr6 (54-121)||(15391904-15391971)
chr6 (377-457)||(4424597-4424676)
chr6 (212-263)||(24447786-24447838)
chr6 (377-457)||(25540184-25540264)
chr6 (212-254)||(6966235-6966278)
chr6 (213-254)||(25540849-25540891)
chr6 (214-254)||(4110061-4110102)
chr6 (376-457)||(4425618-4425699)
chr6 (377-457)||(13456901-13456981)
chr6 (377-457)||(17939633-17939713)
chr6 (212-263)||(33319564-33319616)
chr6 (394-454)||(34856069-34856129)
chr6 (212-263)||(35160114-35160166)
[»] scaffold0103 (1 HSPs)
scaffold0103 (211-461)||(12811-13067)
[»] chr1 (39 HSPs)
chr1 (315-438)||(20767409-20767533)
chr1 (315-439)||(26429187-26429312)
chr1 (211-461)||(23909713-23909954)
chr1 (315-438)||(3929812-3929937)
chr1 (212-437)||(34265874-34266103)
chr1 (209-311)||(28565425-28565528)
chr1 (212-311)||(28631754-28631854)
chr1 (242-311)||(12714915-12714984)
chr1 (241-311)||(15317589-15317659)
chr1 (213-295)||(43118896-43118977)
chr1 (245-334)||(1954373-1954462)
chr1 (211-263)||(3929745-3929798)
chr1 (209-272)||(4893950-4894014)
chr1 (377-457)||(24294664-24294744)
chr1 (212-276)||(29693366-29693431)
chr1 (210-254)||(42682592-42682637)
chr1 (216-263)||(13662121-13662169)
chr1 (377-457)||(13662441-13662521)
chr1 (377-457)||(28565751-28565831)
chr1 (377-457)||(39760185-39760265)
chr1 (377-457)||(43254720-43254800)
chr1 (377-457)||(48340464-48340544)
chr1 (208-254)||(1375982-1376029)
chr1 (212-314)||(9112131-9112234)
chr1 (212-254)||(10763588-10763631)
chr1 (213-263)||(20767547-20767598)
chr1 (213-254)||(29840689-29840731)
chr1 (213-254)||(38896815-38896857)
chr1 (213-254)||(46623376-46623418)
chr1 (212-272)||(29184476-29184537)
chr1 (377-438)||(44406514-44406575)
chr1 (213-253)||(47137860-47137901)
chr1 (377-437)||(16031639-16031699)
chr1 (377-457)||(17671591-17671671)
chr1 (377-457)||(28631447-28631527)
chr1 (394-454)||(31619827-31619887)
chr1 (377-457)||(50395134-50395214)
chr1 (377-457)||(51965768-51965848)
chr1 (377-457)||(52309969-52310049)
[»] chr7 (40 HSPs)
chr7 (315-438)||(27840367-27840491)
chr7 (213-439)||(42298807-42299023)
chr7 (317-438)||(12960460-12960582)
chr7 (212-311)||(42996884-42996984)
chr7 (211-311)||(9226018-9226119)
chr7 (214-440)||(23476587-23476805)
chr7 (213-311)||(38434277-38434376)
chr7 (279-357)||(19033713-19033791)
chr7 (279-357)||(20720845-20720923)
chr7 (279-357)||(20765507-20765585)
chr7 (279-357)||(29491085-29491163)
chr7 (279-338)||(33230019-33230078)
chr7 (279-357)||(34282161-34282239)
chr7 (239-331)||(45121953-45122045)
chr7 (213-263)||(12960598-12960649)
chr7 (377-461)||(5962823-5962907)
chr7 (377-457)||(42244908-42244988)
chr7 (377-457)||(42687683-42687763)
chr7 (213-263)||(27840505-27840556)
chr7 (210-263)||(39278229-39278283)
chr7 (211-263)||(17817710-17817763)
chr7 (377-457)||(6911527-6911607)
chr7 (377-457)||(11499990-11500070)
chr7 (212-263)||(21669230-21669282)
chr7 (377-457)||(23299775-23299855)
chr7 (213-272)||(31896813-31896873)
chr7 (377-457)||(47573505-47573585)
chr7 (212-254)||(691289-691332)
chr7 (213-294)||(1484767-1484849)
chr7 (239-333)||(8998425-8998519)
chr7 (213-254)||(39647981-39648023)
chr7 (211-263)||(9151410-9151463)
chr7 (376-457)||(9226271-9226352)
chr7 (394-454)||(14308987-14309047)
chr7 (377-457)||(17478020-17478099)
chr7 (377-457)||(17575115-17575194)
chr7 (202-238)||(31299502-31299538)
chr7 (380-436)||(33030948-33031004)
chr7 (377-457)||(38434602-38434682)
chr7 (210-238)||(47573329-47573357)
[»] scaffold0088 (1 HSPs)
scaffold0088 (211-311)||(52690-52791)
[»] scaffold0051 (2 HSPs)
scaffold0051 (214-311)||(61656-61754)
scaffold0051 (212-254)||(55560-55603)
[»] scaffold0249 (1 HSPs)
scaffold0249 (212-311)||(24917-25016)
[»] scaffold0440 (1 HSPs)
scaffold0440 (220-320)||(8320-8421)
[»] scaffold0242 (1 HSPs)
scaffold0242 (377-457)||(3502-3582)
[»] scaffold0499 (1 HSPs)
scaffold0499 (239-331)||(10672-10764)
[»] scaffold0073 (1 HSPs)
scaffold0073 (239-333)||(33414-33508)
[»] scaffold0376 (1 HSPs)
scaffold0376 (213-311)||(10783-10879)
[»] scaffold0069 (1 HSPs)
scaffold0069 (212-272)||(14630-14691)
[»] scaffold0006 (2 HSPs)
scaffold0006 (216-263)||(151883-151931)
scaffold0006 (377-457)||(152203-152283)
[»] scaffold0057 (1 HSPs)
scaffold0057 (213-263)||(17400-17451)
[»] scaffold0027 (1 HSPs)
scaffold0027 (213-254)||(143213-143255)
[»] scaffold0171 (1 HSPs)
scaffold0171 (379-440)||(30047-30108)
[»] scaffold0484 (1 HSPs)
scaffold0484 (211-250)||(8173-8213)
[»] scaffold0079 (1 HSPs)
scaffold0079 (377-457)||(10658-10738)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 54 - 441
Target Start/End: Original strand, 6092997 - 6093372
Alignment:
Q  54 agaggtgagagggttaacattcaattagagttggtaggaggaattagaatgaaattttggtgatggatcaaagtcatgcatggttggaatcatcaggctt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6092997 agaggtgagagggttaacattcaattagagttggtaggaggaattagaatgaaattttggtgatggatcaaagtcatgcatggttggaatcatcaggctt 6093096  T
Q  154 cttcatttatcaattgatcatgannnnnnngtgtgggttggactgatatttttggtttaaactagttacaaacccgtgcttcgcagagttgaataacgta 253  Q
    |||||||||||||||||||||||       |||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||              
T  6093097 cttcatttatcaattgatcatgatttttt-gtgtaggttggactgatatttttggtgtaaactagttacaaacccgtgcttcgtagggtt---------- 6093185  T
Q  254 tcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaa 353  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  6093186 -cttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatgaaagctctatcaag 6093284  T
Q  354 tcttgattcatgaaa-aaggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaat 441  Q
    ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6093285 tcttgattcatgaaatatggatacattttgttcatgagaccagg-aaacatcataataattaagatgaaactaattggaaccaatgaat 6093372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 214 - 402
Target Start/End: Original strand, 44186859 - 44187041
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 312  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |||||| |||| ||||||| ||||||||||||||||||||||||||    
T  44186859 actagttacaaacccgtgcttcgcacgagttcaataacgtaacttgtaaaaatattgttccaaacgaaaaataggcaaattaatggatattgcacaaaca 44186958  T
Q  313 ttagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaa-ggatacattttgttcatgagaccaggaaaaca 402  Q
    ||||||||||||||||||||||||| |||||||||||||| |        |||||||| |||||||||||| |||||||||||||||||||    
T  44186959 ttagaaatttttaccaaaatatttaccaaagctctatcaagt--------atgaaaaagggatacattttgctcatgagaccaggaaaaca 44187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 214 - 439
Target Start/End: Complemental strand, 30766547 - 30766320
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 312  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||||||   |||||| |||  ||||||||| ||||||| | ||||| || |||||    
T  30766547 actagttacaaacctgtgcttcgcacgggttgaataacgtatcttgtaaaacaattgttccaaaggaaaaataagtaaattaaggaatattacataaaca 30766448  T
Q  313 ttagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataa 411  Q
    |||||||| |||| ||||||||||| ||||||  || ||| |||||||| ||||||| || ||| ||||||||||||||| |||| ||||| ||||||||    
T  30766447 ttagaaatatttatcaaaatatttaccaaagccttaccaagtcttgattgatgaaaagagcatatattttgttcatgagatcaggcaaacaacataataa 30766348  T
Q  412 ttaagatgaaactaattggaaccaatga 439  Q
    ||||||| |||||||||| |||||||||    
T  30766347 ttaagattaaactaattgaaaccaatga 30766320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 434
Target Start/End: Complemental strand, 188713 - 188593
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| |||| |||| ||| |||||||||||||||| | |||| | ||||||||||| ||||||||||||| || ||||||    
T  188713 agaaatatttaccaaaatatttatgaaagttctaccaagtcttgattcatgaaaagatgatatactttgttcatgaaaccaggaaaacatgatcataatt 188614  T
Q  414 aagatgaaactaattggaacc 434  Q
    ||| |||||||||||||||||    
T  188613 aagttgaaactaattggaacc 188593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 301 - 461
Target Start/End: Complemental strand, 23937418 - 23937256
Alignment:
Q  301 attgcacaaacattagaaat-ttttaccaaaa-tatttatcaaagctctatcaaatcttgattcatgaaaaag-gatacattttgttcatgagaccagga 397  Q
    |||| |||||||||| |||| ||||| ||||| ||||||| |||||||||  || |||||||||||||||| | |||| ||||||||||||||||||| |    
T  23937418 attgtacaaacattataaatcttttatcaaaaatatttatgaaagctctactaagtcttgattcatgaaaaggagatatattttgttcatgagaccagaa 23937319  T
Q  398 aaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||| |||||||||||||||||||||| | |||||||||||  ||  ||||| |||||||||    
T  23937318 aaacataataataattaagatgaaactaact-gaaccaatgaaagaaacaataacgtgcaaatt 23937256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 37611459 - 37611583
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||| |||||| | | ||||||||| | ||||||||||| || ||||||    
T  37611459 agaaatatttatcaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactatgttcatgaaatcaggaaaacatgatcataatt 37611558  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||| ||||||||    
T  37611559 aagttgaaactaattgaaaccaatg 37611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 461
Target Start/End: Original strand, 22759056 - 22759291
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||| ||| ||| ||||||||   |||||  |||  ||||||| ||||||||| | |||||||||||||    
T  22759056 aactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaattgtttcaaaggaaaaata-gcaaattaaggaatattgcacaaac 22759154  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaaggatacattttgttcatgagaccaggaaaacatcataataa 411  Q
    |||||||||            |||||||||| || || |   |||||||||||||||| ||||| |||||||||| ||||    ||||||| ||||||||    
T  22759155 attagaaat------------atttatcaaaactttaccgggtcttgattcatgaaaa-ggatatattttgttcaagagattgagaaaacaacataataa 22759241  T
Q  412 ttaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    ||||||| ||||||||||||||| |||||  ||| |||||| ||||||||    
T  22759242 ttaagattaaactaattggaaccgatgaaggaaccaataatctgcaaatt 22759291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 44072773 - 44072852
Alignment:
Q  278 aaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    ||||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  44072773 aaaaaattagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 44072852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 918865 - 918794
Alignment:
Q  286 agcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  918865 agcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 918794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 35437269 - 35437198
Alignment:
Q  240 agttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||| ||||||||  ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  35437269 agttgaataacgtatattgtaaaaaatttgttccaaagaaaaaatgagcaaattaatgaatattgcacaaac 35437198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 50771295 - 50771379
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||||||    
T  50771295 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgcaaatt 50771379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 26035813 - 26035911
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||||||||||  ||| ||| ||| |||||||  ||||||||||  |||||||||||||    
T  26035813 aactagttacaaacccgtgcgtcgcacgggttgaataatgtatcttgtaaaatattttttc-aaaaaaaaaatgtgcaaattaataaatattgcacaaac 26035911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 188777 - 188727
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  188777 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 188727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 36164857 - 36164927
Alignment:
Q  241 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||   |||||||||| ||||||| || ||||||||  |||||||||||||    
T  36164857 gttgaataacgtatcttgtaaaaaaattgttctaaagaaaaaatgagtaaattaattaatattgcacaaac 36164927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 5241031 - 5240947
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaa 295  Q
    ||||||||||||||||||||||||||| | |||||||||||| | ||||||||   ||||||||||  |||||||  ||||||||    
T  5241031 aaactagttacaaacccgtgcttcgcacgggttgaataacgtgttttgtaaaaaaattgttctaaaggaaaaatattcaaattaa 5240947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 16341861 - 16341781
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  16341861 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 16341781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 11383318 - 11383255
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  11383318 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaa 11383255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 15315269 - 15315324
Alignment:
Q  210 ttaaactagttacaaacccgtgc-ttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  15315269 ttaaactagttacaaacccgtgctttcgcacgggttgaataacgtatcttgtaaaa 15315324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 29201597 - 29201547
Alignment:
Q  411 attaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    ||||||||||||| |||||||| |||||||  |||||||||||||||||||    
T  29201597 attaagatgaaacaaattggaatcaatgaaggaactaataatgtgcaaatt 29201547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 39576575 - 39576525
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  39576575 actagttacaaacccgtgcttcgcacgagttgaataacgtattctgtaaaa 39576525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 54792723 - 54792789
Alignment:
Q  244 gaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||   |||||| |||  |||||| |||||||||||| ||||||||||||    
T  54792723 gaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 54792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 8396809 - 8396757
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  8396809 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 8396757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 12157707 - 12157807
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||||||||||| |||| ||||||| | |||||||  |||||| |||||||   |||||| |||  |||||| |||||||||||| ||||||| ||||    
T  12157707 aaactagttacaaatccgtacttcgcacgggttgaatttcgtatcctgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgctcaaa 12157806  T
Q  311 c 311  Q
    |    
T  12157807 c 12157807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 16496096 - 16496016
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||| ||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  16496096 atttggttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaagcaaccaacaatgtgca 16496016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 16496416 - 16496368
Alignment:
Q  216 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  16496416 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaa 16496368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 50741558 - 50741475
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  |||||| || ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||||||    
T  50741558 attttgttcaagagattaggaaa-caacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgcaaatt 50741475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 52853492 - 52853572
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  52853492 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 52853572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 54793013 - 54793093
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||| ||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  54793013 atttggttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 54793093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 22477949 - 22477906
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  22477949 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 22477906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 4137399 - 4137441
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  4137399 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 4137441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 18688716 - 18688674
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  18688716 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 18688674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 35861044 - 35861002
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  35861044 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 35861002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 52843226 - 52843176
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| ||||||||||| |||| || |||||    
T  52843226 actagttacaaacccgtgcttcgcacgagttgaataatgtattttttaaaa 52843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 54512967 - 54512921
Alignment:
Q  394 aggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  54512967 aggaaaacaacattataattaacatgatactaattggaaccaatgaa 54512921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 19360735 - 19360776
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  19360735 actaattacaaacccgtgcttcgcatgagttgaataacgtat 19360776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 52462984 - 52463060
Alignment:
Q  380 ttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||| ||||||| |||| || ||||||||    
T  52462984 ttgttcaagagattaggaaaacaacattataattaacatgatactaattggaa-caatgaagaaaccaacaatgtgca 52463060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 5252422 - 5252502
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  5252422 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaacaatgtgca 5252502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 31369082 - 31369142
Alignment:
Q  394 aggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgt 454  Q
    ||||||||| ||| | |||||| |||| |||||||||||||||||||| ||| || |||||    
T  31369082 aggaaaacaacattacaattaacatgatactaattggaaccaatgaatgaaccaacaatgt 31369142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 35437046 - 35436982
Alignment:
Q  376 cattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    ||||||||||| ||||  ||||||||| ||| |||||||| | || ||||||| |||||||||||    
T  35437046 cattttgttcaagagattaggaaaacaacattataattaacacgatactaattagaaccaatgaa 35436982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 39796521 - 39796601
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  39796521 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaacaatgtgca 39796601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 48521070 - 48521134
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaat 441  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| ||||||||    
T  48521070 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaat 48521134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 49113272 - 49113192
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||| | ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  49113272 attttgttcaagagattaggaaaataacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 49113192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 50742340 - 50742296
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||    
T  50742340 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 50742296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 55294827 - 55294907
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||| || ||||||||    
T  55294827 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaagtaaccaacaatgtgca 55294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 213 - 402
Target Start/End: Original strand, 32725990 - 32726180
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||| |||||||||||||||| | ||| ||||||||||||||||||| | || ||  ||||  |||||| |||||||||||||||||||| ||||    
T  32725990 aactagttataaacccgtgcttcgcatgggttcaataacgtatcttgtaaaaatattattacaaac-gaaaataggcaaattaatggatattgcataaac 32726088  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaa-ggatacattttgttcatgagaccaggaaaaca 402  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  32726089 attagaaatttttaccaaaatatttacgaaagctctatcaagtcttgattcatgaaaaagggatacattttgctcatgagaccaggaaaaca 32726180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 461
Target Start/End: Original strand, 1691425 - 1691665
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaa 309  Q
    ||||||||||||||||||||||||||| | |||||| ||| ||| ||||||||    || ||  ||| ||||||| |||||||||| | |||||||||||    
T  1691425 aaactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaaattatttcaaagaaaaaatgagcaaattaaggaatattgcacaa 1691524  T
Q  310 acattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataa 408  Q
    |||||||||||            |||| |||||||| ||||   ||||||||||| |||| || ||| |||||||||||||||    ||||||| |||||    
T  1691525 acattagaaat------------atttctcaaagctttatcgggtcttgattcataaaaagagcatatattttgttcatgagattgagaaaacaacataa 1691612  T
Q  409 taattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||||||||||||| |||||  ||| |||||||||||||||    
T  1691613 taattaagattaaactaattggaaccgatgaaggaaccaataatgtgcaaatt 1691665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 438
Target Start/End: Complemental strand, 7364757 - 7364648
Alignment:
Q  329 aaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaat 427  Q
    ||||||||| |||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| || |||| |||  ||||||||||    
T  7364757 aaatatttaccaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccaggaaaacatgatcataa-taaattgaaactaat 7364659  T
Q  428 tggaaccaatg 438  Q
    |||||||||||    
T  7364658 tggaaccaatg 7364648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 24279062 - 24278962
Alignment:
Q  245 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagc 344  Q
    ||||| |||||||||||||   ||||||  ||  |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||    
T  24279062 aataatgtatcttgtaaaaaaattgttccgaaggaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagc 24278963  T
Q  345 t 345  Q
    |    
T  24278962 t 24278962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 35357671 - 35357755
Alignment:
Q  273 taaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||| ||||||| |||||||||||| |||||| |||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  35357671 taaaaaaaaaatgagcaaattaatgaatattgtacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 35357755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 3711132 - 3711054
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||  | |||||||||||    
T  3711132 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaaaatttatcaaatctt 3711054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 11866284 - 11866362
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| ||| || |||||| ||||    
T  11866284 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaaactttatcaagtctt 11866362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 7364823 - 7364771
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  7364823 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 7364771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 30922096 - 30922167
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaa 282  Q
    |||||||||||||||||||||||| || | ||||||| |||||||||||||||  ||||||||||| |||||    
T  30922096 aaactagttacaaacccgtgcttcacacgggttgaattacgtatcttgtaaaaaatttgttctaaagaaaaa 30922167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 461
Target Start/End: Original strand, 7984090 - 7984225
Alignment:
Q  329 aaatatttatcaaagctctatcaaatcttgattcatgaaaaagg-atacattttgttcatgagaccaggaaaacat--cataataattaagatgaaacta 425  Q
    |||||||||||||||   || ||| ||||||||||| |||| || ||| ||||||||||||||| ||  |||| |   | ||||||||||||| ||| ||    
T  7984090 aaatatttatcaaagtcgtaccaagtcttgattcataaaaatggcatatattttgttcatgagaacaaaaaaaaaaagcgtaataattaagattaaatta 7984189  T
Q  426 attggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||||||||  ||| ||| |||||||||||    
T  7984190 attggaaccaatgaaggaaccaatgatgtgcaaatt 7984225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 25282349 - 25282405
Alignment:
Q  381 tgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaat 437  Q
    ||||| ||||| |||||||| | |||||||||||||||||||||||||| |||||||    
T  25282349 tgttcgtgagatcaggaaaataacataataattaagatgaaactaattgaaaccaat 25282405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 26827742 - 26827662
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  26827742 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 26827662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 33663844 - 33663924
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||| ||| |||| |||||||||||||||||||| ||| || ||||||||    
T  33663844 attttgttcaagagattaggaaaacaacattataactaacatgatactaattggaaccaatgaatgaaccaacaatgtgca 33663924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 17026158 - 17026060
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||||||||   ||| | |||||||||| ||||||||||||  ||||||  |||  | |||| |||||||||||| |||||||||||||    
T  17026158 aactagttacaaacccgtgcga-gcacgggttgaataacatatcttgtaaaaaatttgttncaaaggagaaatnagcaaattaatgaatattgcacaaac 17026060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 25124044 - 25124141
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||| | ||||||| || ||||||||||||   |||||  |||  |||||| || ||||||| | ||||||||||||    
T  25124044 actagttacaaacccgtgcttcgcacgggttgaattacatatcttgtaaaaaaattgtttcaaaggaaaaatgagtaaattaaggaatattgcacaaa 25124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 17037511 - 17037431
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| |||| |||||||||| | | |||||||| |||| ||||||||||||||| |||  ||| || ||||||||    
T  17037511 attttgttcaagagatcaggaaaacaactttataattaacatgatactaattggaaccaacgaaggaaccaacaatgtgca 17037431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 28380053 - 28380133
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||   |||||||| ||| |||||||| |||| |||||||| ||||||||||| ||| || ||||||||    
T  28380053 attttgttcaagagattgggaaaacaacattataattaacatgatactaattgaaaccaatgaatgaaccaacaatgtgca 28380133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 30570600 - 30570680
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  30570600 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 30570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 30572480 - 30572560
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  30572480 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 30572560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 45205068 - 45205148
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  | ||||||| | | |||||||| |||| |||||||||||||||||||  ||| |||||||||||    
T  45205068 attttgttcaagagattatgaaaacaacgttataattaacatgatactaattggaaccaatgaaggaaccaataatgtgca 45205148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 4289027 - 4289078
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  4289027 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 4289078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 33907470 - 33907407
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||| | ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  33907470 attttgtttaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaa 33907407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 10820973 - 10821070
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||   |||||||||| | ||||||||||||| ||| |||||  ||||||| ||| ||||||  |||||||||||| |||||| ||||||    
T  10820973 actagttacaaatttgtgcttcgcacgggttgaataacgtaacttataaaaaatttgttc-aaaaaaaaaaagagcaaattaatgaatattgaacaaac 10821070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 16723661 - 16723703
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  16723661 aactagttacaaacccgtgcttcgcacgagttcaataacgtat 16723703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 17092315 - 17092245
Alignment:
Q  241 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||| ||||||||||||  ||||||| |||  | |||| ||||| |||||| |||||||||||||    
T  17092315 gttgaataacatatcttgtaaaaaatttgttccaaaggagaaatgagcaatttaatgaatattgcacaaac 17092245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 35286408 - 35286470
Alignment:
Q  395 ggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  35286408 ggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 35286470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 9916707 - 9916748
Alignment:
Q  214 actagttacaaacccgtgcttcgcaga-gttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  9916707 actagttacaaacccgtgcttcgcacaggttgaataacgtat 9916748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 14753424 - 14753343
Alignment:
Q  376 cattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||  ||||||||||  ||| || ||||||||    
T  14753424 cattttgttcaagagattaggaaaacaacattataattaacatgatactaattaaaaccaatgaaggaaccaacaatgtgca 14753343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 14753645 - 14753577
Alignment:
Q  241 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||| ||| |||||| |||||  ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  14753645 gttgaacaacatatcttataaaaaatttattctaaagaaaaaata-gcaaattaatgaatattgcacaaa 14753577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 17025834 - 17025754
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| | | |||||||| |||| ||||||||||||||| |||  ||| || ||||||||    
T  17025834 attttgttcaagagatnaggaaaacaactttataattaacatgatactaattggaaccaacgaaggaaccaacaatgtgca 17025754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 28609998 - 28609953
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  28609998 ttaaactagttacaaacccgtgctttgcacgggttgaataacgtat 28609953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 1515040 - 1515120
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||| || ||||||||    
T  1515040 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaaggaaccaacaatgtgca 1515120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 17092019 - 17091939
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| | | |||||||| |||| ||||||||||||||| |||  ||| || ||||||||    
T  17092019 attttgttcaagagattaggaaaacaactttataattaacatgatactaattggaaccaacgaaggaaccaacaatgtgca 17091939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 18092772 - 18092852
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||| || ||||||||    
T  18092772 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaaggaaccaacaatgtgca 18092852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 22374080 - 22374132
Alignment:
Q  213 aactagttacaaacccgtgcttc-gca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||| ||||||||||||||||| ||| | |||||||||||||||||||||||    
T  22374080 aactacttacaaacccgtgcttcagcacgggttgaataacgtatcttgtaaaa 22374132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 437
Target Start/End: Original strand, 12660957 - 12661183
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||||||   || ||  ||    |||||||||||||||||| |||||||||||||    
T  12660957 aactagttacaaacccgtgcttcgcatgggttaaataacgtatcttgtaaaaaaattatttcaagatgaaaataagcaaattaatgaatattgcacaaac 12661056  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataata 410  Q
    ||||||||| |||| | |||||||||| |||||  |  ||| |||||||||||||||| |  |||  |||||||||| | || |||||||||||||||||    
T  12661057 attagaaatatttatccaaatatttatgaaagcctttccaagtcttgattcatgaaaacaacatatgttttgttcataatactaggaaaacatcataata 12661156  T
Q  411 attaagatgaaactaattggaaccaat 437  Q
    |||||||||||||||||||||||||||    
T  12661157 attaagatgaaactaattggaaccaat 12661183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 11697086 - 11696962
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  11697086 agaaatatttatcaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 11696987  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||||||||||||    
T  11696986 aagttgaaactaattggaaccaatg 11696962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 27272728 - 27272620
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||| |  |||||||||||| |||||| |||||||||| | |||||||||||||    
T  27272728 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaataaatttgttctaaacgaaaaatgagcaaattaaagaatattgcacaaac 27272629  T
Q  312 attagaaat 320  Q
    |||||||||    
T  27272628 attagaaat 27272620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 279 - 437
Target Start/End: Original strand, 4634853 - 4635008
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaaggatacat 378  Q
    |||||| |||||||||||| |||||||||||||| ||   || |||| | |||||||||| |||||| || ||| | ||||||||||||||  |||| ||    
T  4634853 aaaaatgagcaaattaatgaatattgcacaaacactatttatctttatc-aaatatttatgaaagctttaccaagtattgattcatgaaaa--gatatat 4634949  T
Q  379 tttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaat 437  Q
    ||||||||||||  ||||||||||| || | ||||||||||||||||||||||||||||    
T  4634950 tttgttcatgagttcaggaaaacattattaaaattaagatgaaactaattggaaccaat 4635008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 12249910 - 12250010
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  12249910 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 12250009  T
Q  311 c 311  Q
    |    
T  12250010 c 12250010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 23626054 - 23626154
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  23626054 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 23626153  T
Q  311 c 311  Q
    |    
T  23626154 c 23626154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 39445297 - 39445197
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  39445297 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 39445198  T
Q  311 c 311  Q
    |    
T  39445197 c 39445197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 41908053 - 41907954
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||  |||||| |||||  ||||||||||| ||||||| |||||||||||| ||||||||||||    
T  41908053 aaactagttacaaacccgtgcttcgcacgggttgaataatatatcttataaaaaatttgttctaaagaaaaaatgagcaaattaatgaatattgcacaaa 41907954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 44213034 - 44213180
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||| | ||| | ||| |||||||||| || |||||    | || ||||  |||||| |||||||||||| ||||||||||||    
T  44213034 aaactagttacaaacccgtgcgttgcacgggtttaataacgtattttataaaaaaaatattttaaaagaaaaatgagcaaattaatgaatattgcacaaa 44213133  T
Q  311 cattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    ||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  44213134 cattataaatctttatcaaaatatttatgaaagctttatcaagtctt 44213180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 2961008 - 2961105
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||  |||||||  || |||||||  ||||||||||| |||||| ||||||    
T  2961008 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc--aaaaaaaaatgtgcaaattaatgaatattgaacaaac 2961105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 20662985 - 20663063
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  20662985 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 20663063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 30548348 - 30548426
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| | |||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  30548348 aaaaatgatcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 30548426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 38993634 - 38993571
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  38993634 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaa 38993571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 44599653 - 44599590
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  44599653 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaa 44599590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 11697151 - 11697101
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  11697151 actagttacaaacccgtgctttgcacgggttgaataacgtatcttgtaaaa 11697101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 32569575 - 32569656
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaat 292  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| || |||||   ||||||||||  |||||| |||||||    
T  32569575 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttctaaaatgattgttctaaaggaaaaatgagcaaat 32569656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 39204908 - 39204807
Alignment:
Q  212 aaactagttacaaacccgtgcttcgcaga-gttgaataacgtatcttgtaaaagttttgttctaaa-caaaaaataagcaaattaatggatattgcacaa 309  Q
    ||||||||||||||||||||||| ||| | |||||||||| |||||| |||||  || |||| |||  ||||||| || ||||||||  |||||||||||    
T  39204908 aaactagttacaaacccgtgctttgcacaggttgaataacttatcttataaaaaattagttccaaagaaaaaaatgagtaaattaataaatattgcacaa 39204809  T
Q  310 ac 311  Q
    ||    
T  39204808 ac 39204807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 22333157 - 22333237
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  22333157 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaagaaccaacaatgtgca 22333237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 29433990 - 29433910
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  |||||| || ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  29433990 attttgttcaagagattaggaaagcaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 29433910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 41628842 - 41628762
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| |||||||||||    
T  41628842 attttgttcaatagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaataatgtgca 41628762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 18375557 - 18375608
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  18375557 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 18375608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 24055884 - 24055841
Alignment:
Q  212 aaactagttacaaacccgtgcttcgcaga-gttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  24055884 aaactagttacaaacccgtgcttcgcacaggttgaataacgtat 24055841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 41158686 - 41158635
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  41158686 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 41158635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 8307504 - 8307590
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaa 295  Q
    |||||||| |||||||||||||||||||| | ||||||||| |||| || |||||   |||||  ||| ||||||| ||||||||||    
T  8307504 ttaaactaattacaaacccgtgcttcgcacgtgttgaataatgtattttctaaaataattgttacaaagaaaaaatgagcaaattaa 8307590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 36778522 - 36778480
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  36778522 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 36778480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 463
Target Start/End: Complemental strand, 44940393 - 44940307
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaattga 463  Q
    ||||||||||  |||  ||||||| | ||| |||||||| |||| ||||||| |||||||||||  ||| ||||||||||| |||||    
T  44940393 attttgttcaaaagattaggaaaataacattataattaacatgatactaatttgaaccaatgaaggaaccaataatgtgcagattga 44940307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 6300672 - 6300733
Alignment:
Q  396 gaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||| ||| |||||||| |||| ||||||| ||||||||||| |||| || ||||||||    
T  6300672 gaaaacaacattataattaacatgatactaatttgaaccaatgaagaaaccaacaatgtgca 6300733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 23522693 - 23522754
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatg 438  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||    
T  23522693 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatg 23522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 40586443 - 40586484
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  40586443 actagttacaaacccgtgcttcgcacgggttgaataacgtat 40586484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 6477529 - 6477609
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| ||||||||||| |||||||  ||| ||| |||||||    
T  6477529 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaatcaatgaaggaaccaatgatgtgca 6477609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 7391364 - 7391324
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgt 252  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  7391364 aactagttacaaacccgtgcttcgcacgggttgaataacgt 7391324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 8160417 - 8160461
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  8160417 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 8160461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 8763057 - 8763013
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  8763057 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 8763013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 19248059 - 19247975
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| | |||| | |||| |||||||||||||||||||  ||  || ||||||||||||    
T  19248059 attttgttcaagagattaggaaaacaacattaaaatttacatgatactaattggaaccaatgaaggaatcaacaatgtgcaaatt 19247975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 19321243 - 19321159
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| | |||| | |||| |||||||||||||||||||  ||  || ||||||||||||    
T  19321243 attttgttcaagagattaggaaaacaacattaaaatttacatgatactaattggaaccaatgaaggaatcaacaatgtgcaaatt 19321159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 21543247 - 21543180
Alignment:
Q  241 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 309  Q
    ||||||||||||||||| |||||   |||||  |||  |||||| ||||||||||||||||||||||||    
T  21543247 gttgaataacgtatcttataaaa-aattgtttcaaaagaaaaatgagcaaattaatggatattgcacaa 21543180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 23966556 - 23966636
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| ||| |||||||  ||| |||||||||||    
T  23966556 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaatcaatgaaggaaccaataatgtgca 23966636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 27273922 - 27273878
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||    
T  27273922 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 27273878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 37029789 - 37029709
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  37029789 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaacaatgtgca 37029709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 42810973 - 42811053
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| | ||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  42810973 attttgttcaagggattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 42811053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 461
Target Start/End: Original strand, 2366839 - 2367089
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||| ||| |||||| | |||||||||||||||||||||||   || |||||||  |||||| |||||||||| | ||||||||||||     
T  2366839 aactagttacaaacctgtgtttcgcacgggttgaataacgtatcttgtaaaaaaattattctaaaggaaaaatgagcaaattaaggaatattgcacaaat 2366938  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataata 410  Q
    ||||||||  |||| ||||||||||| ||||||  |||||  |||||||||||||||| || ||| ||||||||||||| |  ||||||||| ||||||     
T  2366939 attagaaagatttatcaaaatatttaacaaagccttatcaggtcttgattcatgaaaagagcatatattttgttcatgaaataaggaaaacaacataatt 2367038  T
Q  411 attaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
     ||||||| |||||||||||||||||||||  ||| ||| ||||| |||||    
T  2367039 gttaagattaaactaattggaaccaatgaaggaaccaatgatgtggaaatt 2367089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 22602699 - 22602823
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  22602699 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 22602798  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||||||||||||    
T  22602799 aagttgaaactaattggaaccaatg 22602823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 36366189 - 36366313
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| |||||| || ||| |||||||||||||||| |||||| | ||||||| ||| | ||||||||||| || ||||||    
T  36366189 agaaatatttaccaaaatatttatgaaagctttaccaagtcttgattcatgaaaataggatatactttgttcctgaaatcaggaaaacatgatcataatt 36366288  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||| ||||||||    
T  36366289 aagttgaaactaattgaaaccaatg 36366313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 9702751 - 9702652
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||||    
T  9702751 aactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 9702652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 19365984 - 19365869
Alignment:
Q  216 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacatt 314  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||    |||| |||| ||||||| |||||||||| | ||||||||||||||||    
T  19365984 tagttacaaacccgtgcttcgcatgggttgaataacgtatcttgtaaaaaaaatgttttaaagaaaaaatgagcaaattaaggaatattgcacaaacatt 19365885  T
Q  315 agaaatttttaccaaa 330  Q
    | |||| |||| ||||    
T  19365884 ataaatatttatcaaa 19365869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 461
Target Start/End: Original strand, 38041490 - 38041729
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||||||||||||||||||||||| | |||||| ||| ||| ||||||||    |||||  ||| ||||||| |||||||||| | ||||||||||||    
T  38041490 aactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaagttgtttcaaagaaaaaatgagcaaattaaggaatattgcacaaa 38041589  T
Q  311 cattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataat 409  Q
     |||||||||            ||||||||||||| || |   ||||||||||| |||| || ||| |||||||||| ||||    ||||||| ||||||    
T  38041590 tattagaaat------------atttatcaaagctttaccgggtcttgattcataaaaagagcatatattttgttcacgagattgagaaaacaacataat 38041677  T
Q  410 aattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    ||||||||| ||||||||||||||| |||||  ||| |||||||||||||||    
T  38041678 aattaagattaaactaattggaaccgatgaaggaaccaataatgtgcaaatt 38041729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 9809820 - 9809918
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  9809820 aactagttacaaacccgtgcttcgcacgggttgaataatgtatcttgtaaaaaatttgttc-aaaaaaaaaatgtgcaaattaatgaatattgcacaaac 9809918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 12702061 - 12702158
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  12702061 actagttacaaacccgtgcttcgcacgggttgaataatgtatcttgtaaaaaatttgttc-aaaaaaaaaatgtgcaaattaatgaatattgcacaaac 12702158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 32977100 - 32977209
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||||||   |||||  ||| ||||||| || |||||||   ||||||||||||    
T  32977100 aaactagttacaaaccggtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaagaaaaaatgagtaaattaagaaatattgcacaaa 32977199  T
Q  311 cattagaaat 320  Q
    ||||||||||    
T  32977200 cattagaaat 32977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 7863528 - 7863624
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||| |  ||||||||||| |||||||||||||    
T  7863528 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaagt--gcaaattaatgaatattgcacaaac 7863624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 18037229 - 18037353
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttga-ataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||||||||||| ||||||||||| | ||||| |||||||||| |||||||   |||||||  |  |||||| |||||||||||| ||||||||||||    
T  18037229 aactagttacaaactcgtgcttcgcacgggttgagataacgtatcatgtaaaaaaattgttcttgaggaaaaatgagcaaattaatgaatattgcacaaa 18037328  T
Q  311 cattagaaatttttaccaaaatatt 335  Q
    ||||| |||| |||| |||||||||    
T  18037329 cattataaatctttatcaaaatatt 18037353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 35539965 - 35540049
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||||||    
T  35539965 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgcaaatt 35540049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 36366123 - 36366175
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  36366123 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 36366175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 12763092 - 12763174
Alignment:
Q  229 gtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||| | |||||||||||||||||||||||  ||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  12763092 gtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaaatgtgcaaattaatgaatattgcacaaac 12763174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 22602634 - 22602685
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  22602634 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 22602685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 37464554 - 37464476
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| |||||||||||| |||| |||| |||| |||||||||||| ||| || |||||| ||||    
T  37464554 aaaaatgagcaaattaatgaatattgcacaaaaattataaatctttatcaaaatatttatgaaaactttatcaagtctt 37464476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 42819330 - 42819380
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  42819330 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 42819380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 3028927 - 3028843
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| ||||||||||||||| |||  |||||| ||||||||||||    
T  3028927 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaacgaaggaactaacaatgtgcaaatt 3028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 34374426 - 34374489
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  34374426 attttgttcaagagattaggaaaacaacattataattaacatgacactaattggaaccaatgaa 34374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 3150650 - 3150713
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||||||||||| |||||||||||    
T  3150650 attttgttcaggagattaggaaaacaacattacaattaacatgaaactaattagaaccaatgaa 3150713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 8350292 - 8350241
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||| |||||||||||||| | | |||||||||||||||||||||||    
T  8350292 aactagttataaacccgtgcttcgtacgggttgaataacgtatcttgtaaaa 8350241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 34719500 - 34719449
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  34719500 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 34719449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 41781001 - 41780938
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| | | |||||||| |||| |||||||||||||||||||    
T  41781001 attttgttcaagagattaggaaaacaacgttataattaacatgatactaattggaaccaatgaa 41780938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 25695539 - 25695589
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  25695539 actagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 25695589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 33929949 - 33929887
Alignment:
Q  395 ggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  33929949 ggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 33929887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 290721 - 290640
Alignment:
Q  376 cattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||| ||||  ||||||||| ||| |||||||| || | ||||||| |||||||||||  ||| || ||||||||    
T  290721 cattttgttcaagagattaggaaaacaacattataattaacattatactaattagaaccaatgaaggaaccaacaatgtgca 290640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 3086433 - 3086474
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  3086433 actagttacaaacccgtgcttcgcacgggttgaataacgtat 3086474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 20758119 - 20758058
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatg 438  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||    
T  20758119 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatg 20758058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 752053 - 752097
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  752053 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 752097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 9702425 - 9702345
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| | | |||||||| |||| ||||||||||||||| |||  ||| || ||||||||    
T  9702425 attttgttcaagagattaggaaaacaactttataattaacatgatactaattggaaccaacgaaggaaccaacaatgtgca 9702345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 13596962 - 13596910
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| || |||||    
T  13596962 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttttaaaa 13596910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 19395529 - 19395449
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| |||  ||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  19395529 attttgttcaagagattaggaaaacaacattttaattaacatgatactaatttgaaccaatgaaagaaccaacaatgtgca 19395449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 19448176 - 19448096
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||| | ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  19448176 attttgtttaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 19448096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 31295720 - 31295800
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  31295720 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaagaaccaacaatgtgca 31295800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 214 - 461
Target Start/End: Complemental strand, 56541807 - 56541557
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 312  Q
    |||||||||||||| |||||||||| | |||||||||||||||| ||||||   || ||  |||  |||||||||||||||||   |  |||||||||||    
T  56541807 actagttacaaacctgtgcttcgcacgggttgaataacgtatctcgtaaaaaaattatttcaaaggaaaaataagcaaattaagaaaagttgcacaaaca 56541708  T
Q  313 ttagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaagga---tacattttgttcatgagaccaggaaaacatcataat 409  Q
    |||||||| |||| |||  ||||||| ||||   || ||  ||||| |||||||||||  |   || |||||||||||||||||||||||||||||||||    
T  56541707 ttagaaatatttatcaat-tatttatgaaagtcttaccaggtcttgtttcatgaaaaaaaaacatatattttgttcatgagaccaggaaaacatcataat 56541609  T
Q  410 aattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||||||||||||||||||||||||  ||| || ||||||||||||    
T  56541608 aattaagatgaaactaattggaaccaatgaaggaaccaagaatgtgcaaatt 56541557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 33486445 - 33486569
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  33486445 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 33486544  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||||||||||||    
T  33486545 aagttgaaactaattggaaccaatg 33486569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 43014655 - 43014779
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  43014655 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 43014754  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||||||||||||    
T  43014755 aagttgaaactaattggaaccaatg 43014779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 16895929 - 16895818
Alignment:
Q  328 aaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaa 426  Q
    ||||||||||| ||||||||| ||| |||||||||||||||| |||||| |  |||||||||| ||||||||||||| |||||||||||| || ||||||    
T  16895929 aaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatataccttgttcatgaaaccaggaaaacatgataataattaagttgcaactaa 16895830  T
Q  427 ttggaaccaatg 438  Q
    ||||||||||||    
T  16895829 ttggaaccaatg 16895818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 26870028 - 26870127
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||| ||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||||    
T  26870028 aactagttacaaacccgtgctttgcacgggttgaataacatatcttgtaaaaaatttgttcaaaaggaaaaatgagcaaattaatgaatattgcacaaac 26870127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 15650485 - 15650582
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||  |||||||  || |||||||  ||||||||||| |||||| ||||||    
T  15650485 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc--aaaaaaaaatgtgcaaattaatgaatattgaacaaac 15650582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 3839095 - 3839193
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||   ||||||  || ||||||| | |||||||||  |||||||||||||    
T  3839095 actagttacaaacccgtgcttcgcaagggttgaataacgtatcttgtaaaaaaattgttcctaagaaaaaatgaacaaattaataaatattgcacaaac 3839193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 10259391 - 10259469
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  10259391 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 10259469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 24077460 - 24077538
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  24077460 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 24077538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 26924330 - 26924408
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  26924330 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 26924408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 43332585 - 43332507
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  43332585 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 43332507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 51452652 - 51452574
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  51452652 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 51452574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 332
Target Start/End: Original strand, 23992319 - 23992439
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||| | |||||  ||||||| |||  |||||| ||||||||| || |||||||||||||    
T  23992319 aactagttacaaacctgtgtttcgcacgggttgaataacgtatcgtttaaaaaatttgttccaaaggaaaaatgagcaaattactgaatattgcacaaac 23992418  T
Q  312 attagaaatttttaccaaaat 332  Q
    |||  |||| |||| ||||||    
T  23992419 attttaaatatttatcaaaat 23992439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 19591124 - 19591009
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgt-aaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 309  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||    | ||  |||  |||||| |||||||||||| |||||||||||    
T  19591124 aaactagttacaaacccgtgcttcgcacgggtttaataacgtatcttgtaaaaaaaaatatttcaaaggaaaaatgagcaaattaatgaatattgcacaa 19591025  T
Q  310 acattagaaattttta 325  Q
    |||||| |||| ||||    
T  19591024 acattataaatattta 19591009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 21565064 - 21564986
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| |||||||| |||||||| |||| |||| |||||||||||| |||| | |||||| ||||    
T  21565064 aaaaatgagcaaattaatgaatattgcataaacattataaatctttatcaaaatatttatgaaagttttatcaagtctt 21564986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 28120217 - 28120315
Alignment:
Q  245 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaag 343  Q
    |||||||||||||| ||||   |||||| |||  |||||| || ||||||||| ||||||||||||||||| |||| |||| || ||||||||| ||||    
T  28120217 aataacgtatcttgaaaaaaaattgttccaaaggaaaaatgagtaaattaatgaatattgcacaaacattataaatctttatcagaatatttatgaaag 28120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 43014591 - 43014641
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43014591 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 43014641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 1975435 - 1975318
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 312  Q
    ||||||||||||||| ||||||||| | ||||||| || ||||||| ||||   |||||  |||  |||||| |||||||||| | |||||||||||| |    
T  1975435 actagttacaaacccatgcttcgcacgggttgaattacatatcttgcaaaaaaattgtttcaaaggaaaaatgagcaaattaaggaatattgcacaaata 1975336  T
Q  313 ttagaaatttttaccaaa 330  Q
    |||||||| |||| ||||    
T  1975335 ttagaaatatttatcaaa 1975318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 28973288 - 28973208
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  28973288 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 28973208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 29706146 - 29706233
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgt-aaaagttttgttctaaacaaaaaataagcaaattaa 295  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||||||| ||||   ||||||||||  |||||| ||||||||||    
T  29706146 ttaaactagttataaacccgtgcttcgcacggattgaataacgtatcttgtaaaaaaaattgttctaaaagaaaaatgagcaaattaa 29706233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 38008070 - 38008007
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  38008070 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaa 38008007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 16895991 - 16895941
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  16895991 actagttacaaacccatgcttcgcacgggttgaataacgtatcttgtaaaa 16895941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 17741706 - 17741660
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatctt 257  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  17741706 aaactagttacaaacccgtgtttcgcatgagttgaataacgtatctt 17741660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 49711650 - 49711744
Alignment:
Q  239 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaata 333  Q
    |||||||||||||||| |   ||||  ||||||| |||  |||||| |||||||||| | ||| |||||||||||||||||| |||| |||||||    
T  49711650 gagttgaataacgtatttcagaaaaaatttgttccaaaggaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaata 49711744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 740473 - 740553
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| |||||||||||    
T  740473 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaataatgtgca 740553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 3839428 - 3839508
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||| |||||||||||||  ||| || ||||||||    
T  3839428 attttgttcaagagattaggaaaacaacattataattaacatgatactaactggaaccaatgaaggaaccaacaatgtgca 3839508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 7643855 - 7643935
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| || | |||||||||||||||||||  ||| || ||||||||    
T  7643855 attttgttcaagagattaggaaaacaacattataattaacataatactaattggaaccaatgaaggaaccaacaatgtgca 7643935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 13628278 - 13628194
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| ||||||||||| |||||||  ||| || ||||||||||||    
T  13628278 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaatcaatgaaggaaccaacaatgtgcaaatt 13628194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 19831460 - 19831540
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  19831460 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 19831540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 23479868 - 23479824
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||    
T  23479868 taaactagttacaaacccgtgcttcgcacgagttcaataacgtat 23479824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 33503060 - 33503140
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  33503060 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 33503140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 35707655 - 35707699
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  35707655 taaactagttacaaacccgtgcttcgcacgggttgaataacgtat 35707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 2118233 - 2118191
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  2118233 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 2118191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 5759384 - 5759342
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  5759384 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 5759342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 29713870 - 29713824
Alignment:
Q  209 tttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||    
T  29713870 tttaaactagttacaaacccgtgctttgcacgggttgaataacgtat 29713824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 39713496 - 39713546
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  39713496 actagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 39713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 574177 - 574218
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  574177 actagttacaaacccgtgcttcgcacgggttgaataacgtat 574218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 2777267 - 2777222
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||    
T  2777267 ttaaactagttacaaacccgtgcttcgcacgggttcaataacgtat 2777222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 3759321 - 3759280
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  3759321 actagttacaaacccgtgcttcgcacgggttgaataacgtat 3759280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 12680630 - 12680671
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  12680630 actagttacaaacccgtgcttcgcacgggttgaataacgtat 12680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 15520942 - 15520862
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  15520942 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaacaatgtgca 15520862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 27892640 - 27892668
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca 238  Q
    |||||||||||||||||||||||||||||    
T  27892640 ttaaactagttacaaacccgtgcttcgca 27892668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 37352145 - 37352101
Alignment:
Q  211 taaactagttacaaacccgtgcttcgcaga-gttgaataacgtat 254  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  37352145 taaactagttacaaacccgtgctttgcacaggttgaataacgtat 37352101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 37357044 - 37357000
Alignment:
Q  211 taaactagttacaaacccgtgcttcgcaga-gttgaataacgtat 254  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  37357044 taaactagttacaaacccgtgctttgcacaggttgaataacgtat 37357000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 37701662 - 37701742
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  37701662 attttgttcaagagattaggaaaacaacattacaattaacatgatactaatttgaaccaatgaaggaaccaacaatgtgca 37701742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 213 - 461
Target Start/End: Original strand, 2624721 - 2624971
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||||||   |||||  |||  |||||| || |||||||   | |||||||||||    
T  2624721 aactagttacaaacccgtgcatcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaaggaaaaatgagaaaattaagaaaaattgcacaaac 2624820  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg--aaaaaggatacattttgttcatgagaccaggaaaacatcataat 409  Q
    |||| |||| |||| |||||||||||| |||||  || ||| |||||||| |||  |||||  ||| |||||||||||||||||| |||||||||||||     
T  2624821 attaaaaatatttatcaaaatatttatgaaagccttaccaagtcttgatttatgaaaaaaaacatatattttgttcatgagaccacgaaaacatcataa- 2624919  T
Q  410 aattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
     ||||||| ||||||||||||||||| ||||  ||| || |||||| |||||    
T  2624920 gattaagaagaaactaattggaaccattgaaggaacaaaaaatgtgaaaatt 2624971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 216 - 461
Target Start/End: Original strand, 22975720 - 22975967
Alignment:
Q  216 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacatt 314  Q
    |||||||||| | |||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| ||||||||||   | ||||||||||||||    
T  22975720 tagttacaaatctgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaagaaaaattgcacaaacatt 22975819  T
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg---aaaaaggatacattttgttcatgagaccaggaaaacatcataataa 411  Q
    | |||| |||| |||||||||||| |||| |||  | | |||||||| |||   |||||  ||| |||||||||||||||||| |||||||||||||  |    
T  22975820 aaaaatatttatcaaaatatttatgaaag-tcttaccagtcttgatttatgaaaaaaaaacatatattttgttcatgagaccacgaaaacatcataa-ga 22975917  T
Q  412 ttaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||||||||||||| ||| ||||  ||| || ||||||||||||    
T  22975918 ttaagatgaaactaattggagccactgaaggaacaaaaaatgtgcaaatt 22975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 216 - 461
Target Start/End: Complemental strand, 23812681 - 23812434
Alignment:
Q  216 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacatt 314  Q
    |||||||||| | |||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| ||||||||||   | ||||||||||||||    
T  23812681 tagttacaaatctgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaagaaaaattgcacaaacatt 23812582  T
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg---aaaaaggatacattttgttcatgagaccaggaaaacatcataataa 411  Q
    | |||| |||| |||||||||||| |||| |||  | | |||||||| |||   |||||  ||| |||||||||||||||||| |||||||||||||  |    
T  23812581 aaaaatatttatcaaaatatttatgaaag-tcttaccagtcttgatttatgaaaaaaaaacatatattttgttcatgagaccacgaaaacatcataa-ga 23812484  T
Q  412 ttaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||||||||||||| ||| ||||  ||| || ||||||||||||    
T  23812483 ttaagatgaaactaattggagccactgaaggaacaaaaaatgtgcaaatt 23812434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 11470837 - 11470960
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaa-aaaggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||| | |||||| | ||||||||||| ||||||||||||| || |||| |    
T  11470837 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaacagaggatatactttgttcatgaaaccaggaaaacatgatcataa-t 11470935  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||||||||||||    
T  11470936 aagttgaaactaattggaaccaatg 11470960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 1932382 - 1932283
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||||||  ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  1932382 aactagttacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaagaaaaaatgagcaaattaatgaatattgcacaaac 1932283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 433
Target Start/End: Complemental strand, 33300710 - 33300486
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||| ||||||| | |||||||| ||||| |||||||| | |||||  |||  |||||| || ||||||| | ||||| |||||||    
T  33300710 aactagttacaaacccgtacttcgcacgggttgaatatcgtatattgtaaaaatattgtttcaaaggaaaaatgagtaaattaaggaatatttcacaaac 33300611  T
Q  312 attagaaatttttaccaaaa-tat-ttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataa 408  Q
    ||||||||| |||| ||    | | ||||||||||  || |   |||||||||||||||| || ||| ||||||||||||||| || ||| ||| |||||    
T  33300610 attagaaatatttatcatttgtgtcttatcaaagccttacctggtcttgattcatgaaaagagcatatattttgttcatgagatcaagaacacaacataa 33300511  T
Q  409 taattaagatgaaactaattggaac 433  Q
    |||||||||| ||||||||||||||    
T  33300510 taattaagattaaactaattggaac 33300486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 438
Target Start/End: Original strand, 18389232 - 18389341
Alignment:
Q  329 aaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaat 427  Q
    ||||||||| |||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| || |||| |||  ||||||||||    
T  18389232 aaatatttaccaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccaggaaaacatgatcataa-taaattgaaactaat 18389330  T
Q  428 tggaaccaatg 438  Q
    |||||||||||    
T  18389331 tggaaccaatg 18389341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 33319092 - 33318995
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||| |  ||||||||||| ||||||||||||    
T  33319092 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaagt--gcaaattaatgaatattgcacaaa 33318996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 4425951 - 4425851
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||||||||||||||||| |||||| | ||||| |||||||||||||||||   || ||| ||| ||||||| |||||||||||| ||||||||||||    
T  4425951 aaactagttacaaacccgtgtttcgcacgggttgactaacgtatcttgtaaaaaaattattccaaagaaaaaatgagcaaattaatgaatattgcacaaa 4425852  T
Q  311 c 311  Q
    |    
T  4425851 c 4425851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 250098 - 250020
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  250098 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 250020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 12579844 - 12579922
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  12579844 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 12579922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 33979226 - 33979081
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||| |||||| | ||| |||||||||| ||||||||    || ||  |||  |||||| |||||||||||| |||||||||||||    
T  33979226 actagttacaaacccgtgtttcgcacgggtttaataacgtattttgtaaaaaaaattatttcaaaagaaaaatgagcaaattaatgaatattgcacaaac 33979127  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||| |||| |||| |||||||||||| |||| | |||||| ||||    
T  33979126 attataaatctttatcaaaatatttatgaaagttttatcaagtctt 33979081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 11272739 - 11272664
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatga 389  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| | ||| |||||||    
T  11272739 agaaatatttaccaaaatatttatgaaagctctaccaaatcttgattcatgaaaagaggatatactttattcatga 11272664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 18389166 - 18389218
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  18389166 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 18389218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 3052060 - 3052128
Alignment:
Q  267 ttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatt 335  Q
    ||||||| || ||||||| |||||||||||| |||||||||||| |||| |||| |||| |||||||||    
T  3052060 ttgttctgaagaaaaaatgagcaaattaatgaatattgcacaaatattataaatctttatcaaaatatt 3052128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 30044399 - 30044319
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  30044399 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 30044319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 5753125 - 5753213
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatatt 303  Q
    ||||||||||||||||||| ||||||| | |||||||||||||| ||||||||  ||||||    | ||||||| |||||||||||| |||||    
T  5753125 aaactagttacaaacccgtacttcgcacgggttgaataacgtatattgtaaaaaatttgtt----aaaaaaaatgagcaaattaatgaatatt 5753213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 8615112 - 8615029
Alignment:
Q  226 cccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||| |  ||||||||||| |||||||||||||    
T  8615112 cccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaagt--gcaaattaatgaatattgcacaaac 8615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 11272804 - 11272753
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  11272804 aactagttacaaatccgtgcttcgcacgagttgaataatgtatcttgtaaaa 11272753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 15391904 - 15391971
Alignment:
Q  54 agaggtgagagggttaacattcaattagagttggtaggaggaattagaatgaaattttggtgatggat 121  Q
    |||||||||||  | |||| |||||||||| ||||||| | ||||||||||| |||||||||||||||    
T  15391904 agaggtgagagattcaacactcaattagaggtggtaggggcaattagaatgagattttggtgatggat 15391971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 4424676 - 4424597
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| |||||||||||    
T  4424676 attttgttcaagagattaggaaaacaacattacaattaa-atgatactaattggaaccaatgaaggaaccaataatgtgca 4424597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 24447838 - 24447786
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  24447838 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 24447786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 25540264 - 25540184
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||| |||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  25540264 attttattcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 25540184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 6966235 - 6966278
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  6966235 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 6966278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 25540891 - 25540849
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  25540891 aactagttacaaacccgtgcttcgcacgagttcaataacgtat 25540849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 4110102 - 4110061
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  4110102 actagttacaaacccgtgcttcgcacgggttgaataacgtat 4110061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 4425699 - 4425618
Alignment:
Q  376 cattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||| ||||||| |||  ||| || ||||||||    
T  4425699 cattttgttcaagagattaggaaaacaacattataattaacatgatactaattagaaccaaggaaggaaccaacaatgtgca 4425618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 13456901 - 13456981
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||| ||  ||| |||||||||||    
T  13456901 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaataaaggaaccaataatgtgca 13456981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 17939713 - 17939633
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||| | ||| |||||||| |||| ||| |||||||||||||||  || ||| ||||||||    
T  17939713 attttgttcaagagattaggaaaataacattataattaacatgatactgattggaaccaatgaaggaattaacaatgtgca 17939633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 33319564 - 33319616
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||| |||||||||||| |||||||||||| ||| || |||||    
T  33319564 aaactagttacaaatccgtgcttcgcacgagttgaataacatattttttaaaa 33319616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 34856129 - 34856069
Alignment:
Q  394 aggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgt 454  Q
    ||||||||| | | |||||||| |||| ||||||||||||||||||| |||| || |||||    
T  34856129 aggaaaacaacgttataattaacatgatactaattggaaccaatgaagaaaccaacaatgt 34856069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 35160166 - 35160114
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||| |||||||||||| | |||||||||||||| || |||||    
T  35160166 aaactagttacaaatccgtgcttcgcacgggttgaataacgtattttttaaaa 35160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 211 - 461
Target Start/End: Complemental strand, 13067 - 12811
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 309  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| || |||||||   | |||||||||    
T  13067 taaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgaggaaattaagaaaaattgcacaa 12968  T
Q  310 acattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg-------aaaaaggatacattttgttcatgagaccaggaaaaca 402  Q
    |||||| |||| |||| |||||||||||| |||||  || ||| |||| ||| |||       |||||  ||| |||||||||||||||||| |||||||    
T  12967 acattaaaaatatttatcaaaatatttatgaaagccttaccaagtctt-atttatgaagaaaaaaaaaacatatattttgttcatgagaccacgaaaaca 12869  T
Q  403 tcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    ||||||  |||||||||||| ||||||||||||  |||  ||| || ||||||||||||    
T  12868 tcataa-gattaagatgaaattaattggaaccaccgaaggaacaaaaaatgtgcaaatt 12811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 20767533 - 20767409
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| || ||||||    
T  20767533 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccaggaaaacatgatcataatt 20767434  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    | | |||||||||||||||||||||    
T  20767433 aggttgaaactaattggaaccaatg 20767409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 315 - 439
Target Start/End: Original strand, 26429187 - 26429312
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | | ||||||||| | ||| ||||||| || ||||||    
T  26429187 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactatgttcatgaaaacagaaaaacatgatcataatt 26429286  T
Q  414 aagatgaaactaattggaaccaatga 439  Q
    ||| ||||||||||||||||||||||    
T  26429287 aagttgaaactaattggaaccaatga 26429312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 461
Target Start/End: Original strand, 23909713 - 23909954
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcaca 308  Q
    |||||||||||||||||||||||||||| | |||||| ||| ||| ||||||||    |||||  ||| ||||||| |||||||||| | ||||||||||    
T  23909713 taaactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaaattgtttcaaagaaaaaatgagcaaattaaggaatattgcaca 23909812  T
Q  309 aacattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcata 407  Q
    ||||||||||||            |||| |||||||| ||||   ||||||||||| |||| || ||| |||||||||||||||    ||||||| ||||    
T  23909813 aacattagaaat------------atttctcaaagctttatcgggtcttgattcataaaaagagcatatattttgttcatgagattgagaaaacaacata 23909900  T
Q  408 ataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    ||||||||||| ||||||||||||||| |||||  ||| |||||||||||||||    
T  23909901 ataattaagattaaactaattggaaccgatgaaggaaccaataatgtgcaaatt 23909954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 3929812 - 3929937
Alignment:
Q  315 agaaatttttaccaaaa-tatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataat 412  Q
    |||||| |||||||||| ||||||| ||||||||| ||| |||||||||||||||| | |||| | ||||||||||| ||||||||||||  || |||||    
T  3929812 agaaatatttaccaaaaatatttatgaaagctctaccaagtcttgattcatgaaaagatgatatactttgttcatgaaaccaggaaaacacgatcataat 3929911  T
Q  413 taagatgaaactaattggaaccaatg 438  Q
    |||| |||||||||||||||||||||    
T  3929912 taagttgaaactaattggaaccaatg 3929937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 437
Target Start/End: Original strand, 34265874 - 34266103
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||| ||||||||| |||||||||| | |||||||| ||||| ||||||||   |||||  ||| ||||||| |||||||||| | ||||| ||||||    
T  34265874 aaactaattacaaacctgtgcttcgcacgggttgaatatcgtatattgtaaaaaaattgtttcaaagaaaaaatgagcaaattaaggaatatttcacaaa 34265973  T
Q  311 cattagaaatttttaccaaaa-tat-ttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcata 407  Q
    |||||||||| |||| ||    | | ||||||||||  || ||  | |||||||||||||| || ||| ||||||||||||||| || ||| ||| ||||    
T  34265974 cattagaaatatttatcatttgtgtcttatcaaagccttaccaggtattgattcatgaaaagagcatatattttgttcatgagatcaagaacacaacata 34266073  T
Q  408 ataattaagatgaaactaattggaaccaat 437  Q
    ||||||||||| ||||||||||||||||||    
T  34266074 ataattaagattaaactaattggaaccaat 34266103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 28565425 - 28565528
Alignment:
Q  209 tttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcac 307  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||    
T  28565425 tttaaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcac 28565524  T
Q  308 aaac 311  Q
    ||||    
T  28565525 aaac 28565528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 28631854 - 28631754
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  28631854 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 28631755  T
Q  311 c 311  Q
    |    
T  28631754 c 28631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 12714984 - 12714915
Alignment:
Q  242 ttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||| | |||||| |||  |||||| |||||||||||| |||||||||||||    
T  12714984 ttgaataacgtatcttgtaaaaatattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 12714915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 15317659 - 15317589
Alignment:
Q  241 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||||||    
T  15317659 gttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 15317589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 43118977 - 43118896
Alignment:
Q  213 aactagttacaaacccgtgcttcgcagagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaa 295  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||   || |||||||  |||||||| ||||||||    
T  43118977 aactagttacaaacccgtgcttcgcag-gttgaataacatattttgtaaaaaaattattctaaaggaaaaataatcaaattaa 43118896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 1954373 - 1954462
Alignment:
Q  245 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatat 334  Q
    |||||||||||||||||||   || ||| ||| ||||||| |||||||||||| ||||| |||||| ||||||||| |||| | ||||||    
T  1954373 aataacgtatcttgtaaaaaaattattccaaagaaaaaatgagcaaattaatgaatattacacaaatattagaaatctttatccaaatat 1954462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 3929745 - 3929798
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  3929745 taaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttataaaa 3929798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 4894014 - 4893950
Alignment:
Q  209 tttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 272  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  4894014 tttaaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaaatttagttc 4893950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 24294744 - 24294664
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||| ||||||||||| |||| || ||||||||    
T  24294744 attttgttcaagagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaagaaaccaacaatgtgca 24294664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 29693431 - 29693366
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaa 276  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| || |||||  |||||||||||    
T  29693431 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttttaaaaaatttgttctaaa 29693366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 42682637 - 42682592
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||    
T  42682637 ttaaactagttacaaacccgtgcttcgcacgggttgaataacgtat 42682592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 13662121 - 13662169
Alignment:
Q  216 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  13662121 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaa 13662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 13662441 - 13662521
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||| ||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  13662441 atttggttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaagcaaccaacaatgtgca 13662521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 28565751 - 28565831
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||| ||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  28565751 atttggttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 28565831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 39760185 - 39760265
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  || |||||| ||| |||||||| |||| ||||||| ||||||||||| |||| || ||||||||    
T  39760185 attttgttcaagagattagaaaaacaacattataattaacatgatactaatttgaaccaatgaagaaaccaacaatgtgca 39760265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 43254720 - 43254800
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| |||||||||||    
T  43254720 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaataatgtgca 43254800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 48340544 - 48340464
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  | ||||||| | | |||||||| |||| |||||||||||||||||||  ||| |||||||||||    
T  48340544 attttgttcaggagattatgaaaacaacgttataattaacatgatactaattggaaccaatgaaggaaccaataatgtgca 48340464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 1376029 - 1375982
Alignment:
Q  208 gtttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  1376029 gtttaaactagttacaaacccgtgctttgcacgggttgaataacgtat 1375982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 9112234 - 9112131
Alignment:
Q  212 aaactagttacaaacccgtgcttcgcagag-ttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    |||||||||||||| ||||| ||||||  | || |||||| |||||| |||||   ||||| ||||  |||||| |||||||||||  ||||||||||||    
T  9112234 aaactagttacaaatccgtgtttcgcacggattaaataacatatcttataaaaaaattgttttaaaagaaaaatgagcaaattaataaatattgcacaaa 9112135  T
Q  311 catt 314  Q
    ||||    
T  9112134 catt 9112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 10763631 - 10763588
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  10763631 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 10763588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 20767598 - 20767547
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  20767598 aactagttacaaacccgtgcttcgcacggcttgaataacgtatcttataaaa 20767547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 29840689 - 29840731
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  29840689 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 29840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 38896857 - 38896815
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  38896857 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 38896815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 46623376 - 46623418
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  46623376 aactagttacaatcccgtgcttcgcacgagttgaataacgtat 46623418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 29184476 - 29184537
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 272  Q
    ||||||||||||||||||||||||||| |  ||||||||||||| || ||||| ||| ||||    
T  29184476 aaactagttacaaacccgtgcttcgcacggattgaataacgtattttttaaaaatttagttc 29184537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 44406575 - 44406514
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatg 438  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||    
T  44406575 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatg 44406514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 47137901 - 47137860
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgta 253  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  47137901 aactagttacaaacccgtgcttcgcacgggttgaataacgta 47137860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 16031639 - 16031699
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaat 437  Q
    |||||||||| ||||   |||||||| ||| |||||||| |||| ||||||||||||||||    
T  16031639 attttgttcaagagattgggaaaacaacattataattaacatgatactaattggaaccaat 16031699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 17671671 - 17671591
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||   |||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  17671671 attttgttcaagagattgggaaaacaacattataattaacatgatactaattagaaccaatgaaggaaccaacaatgtgca 17671591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 28631527 - 28631447
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| | | |||||||| |||| ||||||||||||||| |||  ||| || ||||||||    
T  28631527 attttgttcaagagattaggaaaacaactttataattaacatgatactaattggaaccaacgaaggaaccaacaatgtgca 28631447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 31619887 - 31619827
Alignment:
Q  394 aggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgt 454  Q
    ||||||||| ||| | |||||| |||| ||||||||||||||||||| |||| || |||||    
T  31619887 aggaaaacaacattacaattaacatgatactaattggaaccaatgaagaaaccaacaatgt 31619827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 50395134 - 50395214
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||| | ||| |||||||| |||| ||||||| |||||||||||  ||| |||||||||||    
T  50395134 attttgttcaaaagattaggaaaataacattataattaacatgatactaatttgaaccaatgaaggaaccaataatgtgca 50395214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 51965768 - 51965848
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||| || ||||||||    
T  51965768 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaaggaaccaacaatgtgca 51965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 52310049 - 52309969
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||| || ||||||||    
T  52310049 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaaggaaccaacaatgtgca 52309969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 27840491 - 27840367
Alignment:
Q  315 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 413  Q
    |||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  27840491 agaaatatttatcaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 27840392  T
Q  414 aagatgaaactaattggaaccaatg 438  Q
    ||| |||||||||||||||||||||    
T  27840391 aagttgaaactaattggaaccaatg 27840367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 213 - 439
Target Start/End: Original strand, 42298807 - 42299023
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||| |||| ||  || | |||||||||||||||||||||||   |||||||||||||||||| | | |||||| | |||||||||||||    
T  42298807 aactagttacaaactcgtgttttacacgggttgaataacgtatcttgtaaaaaaattgttctaaacaaaaaatgaactaattaaggaatattgcacaaac 42298906  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataata 410  Q
    |||| |||| |||| ||||| |||            | ||  ||||||||| |||||| || ||| ||||||| ||||||| |||||||||| |||||||    
T  42298907 attataaatatttatcaaaacatt------------accaggtcttgattcttgaaaagagcatatattttgtccatgagatcaggaaaacaacataata 42298994  T
Q  411 attaagatgaaactaattggaaccaatga 439  Q
    |||||||| ||||||||||||||||||||    
T  42298995 attaagattaaactaattggaaccaatga 42299023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 12960582 - 12960460
Alignment:
Q  317 aaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaa 415  Q
    |||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | | ||||||||| | ||||||||||| || ||||||||    
T  12960582 aaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactatgttcatgaaatcaggaaaacatgatcataattaa 12960483  T
Q  416 gatgaaactaattggaaccaatg 438  Q
    | ||||||||||||  |||||||    
T  12960482 gttgaaactaattgagaccaatg 12960460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 42996984 - 42996884
Alignment:
Q  212 aaactagttacaaacccgtgcttcgcagag-ttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  42996984 aaactagttacaaacccgtgcttcgcacaggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 42996885  T
Q  311 c 311  Q
    |    
T  42996884 c 42996884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 9226018 - 9226119
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 309  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||||    
T  9226018 taaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaa 9226117  T
Q  310 ac 311  Q
    ||    
T  9226118 ac 9226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 440
Target Start/End: Original strand, 23476587 - 23476805
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||| || | |||||||||| |||||| ||||| |  ||||||||||  |||||| ||||||||||   |||||||||||||    
T  23476587 actagttacaaacccgtgcttcacacgggttgaataacatatcttataaaaataattgttctaaaggaaaaatgagcaaattaagaaatattgcacaaac 23476686  T
Q  312 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgag-accaggaaaacatcataat 409  Q
    |||||            |||||||||||||||   || ||| |||||||||||||||| |  ||| |||||||||||||| || |  |||| | ||||||    
T  23476687 attag------------aaatatttatcaaagtcttaccaagtcttgattcatgaaaataacatatattttgttcatgagaacaaaaaaaaaaacataat 23476774  T
Q  410 aattaagatgaaactaattggaaccaatgaa 440  Q
    ||||||||| |||||||||||||||||||||    
T  23476775 aattaagattaaactaattggaaccaatgaa 23476805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 38434277 - 38434376
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||||||    
T  38434277 aactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 38434376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 19033713 - 19033791
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||| |||||| ||||    
T  19033713 aaaaatgagcaaattaatgaatattgcacaaacattataaatttttatcaaaatatttatgaaagctttatcaagtctt 19033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 20720923 - 20720845
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||| |||||| ||||    
T  20720923 aaaaatgagcaaattaatgaatattgcacaaacattataaatttttatcaaaatatttatgaaagctttatcaagtctt 20720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 20765585 - 20765507
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  20765585 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 20765507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 29491163 - 29491085
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  29491163 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 29491085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 33230019 - 33230078
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttat 338  Q
    ||||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||    
T  33230019 aaaaataagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttat 33230078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 34282161 - 34282239
Alignment:
Q  279 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 357  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||| | |||||| ||||    
T  34282161 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagttttatcaagtctt 34282239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 45122045 - 45121953
Alignment:
Q  239 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaa 331  Q
    |||||||||||||||| | | ||||  ||||||| ||| ||||||| |||||||||| | ||| |||||||||||||||||| |||| |||||    
T  45122045 gagttgaataacgtatttcggaaaaaatttgttccaaagaaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaa 45121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 12960649 - 12960598
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  12960649 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 12960598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 5962907 - 5962823
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgcaaatt 461  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||||||    
T  5962907 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgcaaatt 5962823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 42244908 - 42244988
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  |||||| || ||| |||||||| |||| |||||||||||||||||||| ||| || ||||||||    
T  42244908 attttgttcaagagattaggaaagcaacattataattaacatgatactaattggaaccaatgaatgaaccaacaatgtgca 42244988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 42687763 - 42687683
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| ||||||||||||||||||||||||  ||| || ||||||||    
T  42687763 attttgttcaagagattaggaaaacaacattacaattaacatgaaactaattggaaccaatgaaggaaccaacaatgtgca 42687683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 27840556 - 27840505
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  27840556 aactagttacaaacccgtgctttgcacgggttgaataacgtatcttgtaaaa 27840505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 39278283 - 39278229
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  39278283 ttaaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 39278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 17817763 - 17817710
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||||| | |||||||||||| | ||||||||    
T  17817763 taaactagttacaaacccgtgcttcgcacgggttgaataacgtgttttgtaaaa 17817710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 6911527 - 6911607
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| |||||||||||    
T  6911527 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaataatgtgca 6911607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 11500070 - 11499990
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  11500070 attttgttcaagagattaggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 11499990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 21669230 - 21669282
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  21669230 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 21669282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 23299775 - 23299855
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| || ||||||||    
T  23299775 attttgttcaagagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaacaatgtgca 23299855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 31896813 - 31896873
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 272  Q
    |||||||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  31896813 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaaatttagttc 31896873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 47573505 - 47573585
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||  |||  ||||||||| ||| |||||||| |||| ||||||| |||||||||||  ||| |||||||||||    
T  47573505 attttgttcaaaagattaggaaaacaacattataattaacatgatactaatttgaaccaatgaaggaaccaataatgtgca 47573585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 691332 - 691289
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  691332 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 691289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 1484849 - 1484767
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaatta 294  Q
    |||| ||||||||||||||||||||| | ||| |||||| ||| ||||||||   ||||||||||  |||||| |||||||||    
T  1484849 aactggttacaaacccgtgcttcgcacgggtttaataacatattttgtaaaataattgttctaaaggaaaaatgagcaaatta 1484767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 8998519 - 8998425
Alignment:
Q  239 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaata 333  Q
    |||||||||||||||| | | ||||   |||||| |||  |||||| |||||||||| | ||| |||| ||||||||||||| |||| |||||||    
T  8998519 gagttgaataacgtatttcgaaaaaaaattgttccaaaggaaaaatgagcaaattaaggaatagtgcaaaaacattagaaatatttatcaaaata 8998425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 39647981 - 39648023
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  39647981 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 39648023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 9151463 - 9151410
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||| ||||||||||||||||||||||| | |||||||||||||| || |||||    
T  9151463 taaattagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 9151410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Original strand, 9226271 - 9226352
Alignment:
Q  376 cattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    ||||||||||| ||||  ||||||||| ||| |||||||| |||| |||||||  ||||||||||  ||| || ||||||||    
T  9226271 cattttgttcaagagattaggaaaacaacattataattaacatgatactaattaaaaccaatgaaggaaccaacaatgtgca 9226352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 14309047 - 14308987
Alignment:
Q  394 aggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgt 454  Q
    ||||||||| ||| | |||||| |||| |||||||||||||||||||  |||||| |||||    
T  14309047 aggaaaacaacattacaattaacatgatactaattggaaccaatgaaggaactaacaatgt 14308987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 17478099 - 17478020
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  |||||| || ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  17478099 attttgttcaagagattaggaaa-caacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 17478020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 17575115 - 17575194
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  |||||| || ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  17575115 attttgttcaagagattaggaaa-caacattataattaacatgatactaattggaaccaatgaaggaaccaacaatgtgca 17575194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 31299538 - 31299502
Alignment:
Q  202 tttttggtttaaactagttacaaacccgtgcttcgca 238  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  31299538 tttttggtataaactagttacaaacccgtgattcgca 31299502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 33031004 - 33030948
Alignment:
Q  380 ttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaa 436  Q
    ||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||    
T  33031004 ttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaa 33030948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 38434602 - 38434682
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| | | |||||||| |||| ||||||||||||||| |||  ||| || ||||||||    
T  38434602 attttgttcaagagattaggaaaacaactttataattaacatgatactaattggaaccaacgaaggaaccaacaatgtgca 38434682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 47573329 - 47573357
Alignment:
Q  210 ttaaactagttacaaacccgtgcttcgca 238  Q
    |||||||||||||||||||||||||||||    
T  47573329 ttaaactagttacaaacccgtgcttcgca 47573357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 52690 - 52791
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 309  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||    
T  52690 taaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaa 52789  T
Q  310 ac 311  Q
    ||    
T  52790 ac 52791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 61754 - 61656
Alignment:
Q  214 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||||    
T  61754 actagttacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 61656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 55603 - 55560
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  55603 aaactagttacaaacccgtgcttcgcacgagttgaataacgtat 55560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 24917 - 25016
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 310  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||||   ||||||||||| ||||||||||||    
T  24917 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaaaagtgcaaattaatgaatattgcacaaa 25015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 8320 - 8421
Alignment:
Q  220 tacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaa 318  Q
    |||| |||||||||||||| | |||||||||| ||||||||||||   |||||| |||  |||||| |||||||||||| ||||||||||||||||||||    
T  8320 tacagacccgtgcttcgcacgtgttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaacattagaa 8419  T
Q  319 at 320  Q
    ||    
T  8420 at 8421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 3502 - 3582
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||||||||| |||| || ||||||||    
T  3502 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaagaaaccaacaatgtgca 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 10672 - 10764
Alignment:
Q  239 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaa 331  Q
    |||||||||||||||| | | ||||  ||||||| |||  |||||| |||||||||| | ||| |||||||||||||||||| |||| |||||    
T  10672 gagttgaataacgtatttcggaaaaaatttgttccaaaggaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaa 10764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 33414 - 33508
Alignment:
Q  239 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaata 333  Q
    ||||||||||| |||| ||| ||||  ||||||| |||  |||||| |||||||||| | ||  |||||||||||||||||| |||| |||||||    
T  33414 gagttgaataaagtattttggaaaaaatttgttccaaaggaaaaatgagcaaattaaggaatcgtgcacaaacattagaaatatttatcaaaata 33508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 10783 - 10879
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 311  Q
    ||||||||||||||||||||   ||| | |||||||||||||||||||||||  ||||||   || |||||||  ||||||||||| || ||||||||||    
T  10783 aactagttacaaacccgtgcgaagcacgggttgaataacgtatcttgtaaaaaatttgtt---aaaaaaaaatgtgcaaattaatgaatcttgcacaaac 10879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 14691 - 14630
Alignment:
Q  212 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 272  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  14691 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaaatttagttc 14630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 151883 - 151931
Alignment:
Q  216 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  151883 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaa 151931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 152203 - 152283
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||| ||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||||||||||  ||| || ||||||||    
T  152203 atttggttcaagagattaggaaaacaacattataattaacatgatactaattggaaccaatgaagcaaccaacaatgtgca 152283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 17400 - 17451
Alignment:
Q  213 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 263  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  17400 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 17451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 143213 - 143255
Alignment:
Q  213 aactagttacaaacccgtgcttcgcaga-gttgaataacgtat 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  143213 aactagttacaaacccgtgcttcgcacaggttgaataacgtat 143255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 30047 - 30108
Alignment:
Q  379 tttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaa 440  Q
    |||||||| ||||  ||||||||| ||| |||||||| |||| |||||||||||| ||||||    
T  30047 tttgttcaagagattaggaaaacaacattataattaacatgatactaattggaactaatgaa 30108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 8173 - 8213
Alignment:
Q  211 taaactagttacaaacccgtgcttcgca-gagttgaataac 250  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  8173 taaactagttacaaacccgtgcttcgcacgggttgaataac 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 10658 - 10738
Alignment:
Q  377 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaaccaatgaataaactaataatgtgca 457  Q
    |||||||||| ||||  ||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||| || ||||||||    
T  10658 attttgttcaagagattaggaaaacaacattataattaacttgatactaattggaatcaatgaaggaacaaacaatgtgca 10738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University