View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_low_4 (Length: 384)
Name: NF15074_low_4
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 47947090 - 47946725
Alignment:
| Q |
1 |
tggttctaccgtaggaccttattcatctcagtttaaccaacaatatgaaatcaacgttggaatattttgggtaataattaataacatgtgtttttgtagt |
100 |
Q |
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| T |
47947090 |
tggttctaccgtaggaccttattcatctcagtttaaccaacaatatgaaatcaacgttggaatattttgggtaataattaataacatgtgtttttgtagt |
47946991 |
T |
|
| Q |
101 |
gtataaaagaactattaattaatttactaatccctcttaaattgttggcttgatttaggatcgtaatgggaactggtggcttagaatgaaggataaaatc |
200 |
Q |
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| T |
47946990 |
gtataaaagaactattaattaatttactaattcctcttaaattgttggcttgatttaggatcgtaatgggaactggtggcttagaatgaaggataaaatc |
47946891 |
T |
|
| Q |
201 |
attgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtggacaagtgtttagttataatgtgaaaacaa |
300 |
Q |
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| T |
47946890 |
attgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtggacaagtgtttagttataatgtgaaaacaa |
47946791 |
T |
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| Q |
301 |
cccctcctcacacaggaacacaaatgggtagtggagaagcagcaagtggtcgatttgggttcgcat |
366 |
Q |
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| T |
47946790 |
cccctcctcacacaggaacacaaatgggtagtggagaagcagcaagtggtcgatttgggttcgcat |
47946725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 142 - 366
Target Start/End: Complemental strand, 47935807 - 47935583
Alignment:
| Q |
142 |
ttgttggcttgatttaggatcgtaatgggaactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttaca |
241 |
Q |
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||||| |||||||||||||| |||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| | || ||||||| ||| |
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| T |
47935807 |
ttgtttgcttgatttaggatgaggatggaaactggtggcttagagtgaaggataccatcatggtaggttattggccagcggaattattgggtaatttaag |
47935708 |
T |
|
| Q |
242 |
acatagtgcaacattggttcaatggggtggacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagca |
341 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||| | |
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| T |
47935707 |
acacagtgcaacattggttcaatggggaggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaacacagatgggtagtggagaagaa |
47935608 |
T |
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| Q |
342 |
gcaagtggtcgatttgggttcgcat |
366 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
47935607 |
gcaagtggtcgatttgggttcgcat |
47935583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 171 - 359
Target Start/End: Complemental strand, 47928344 - 47928156
Alignment:
| Q |
171 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
270 |
Q |
| |
|
||||||||| ||| | ||||| |||| ||| |||||||||||||||||||| | || | ||||| ||| ||| |||||||||||| |||||||||||| |
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| T |
47928344 |
aactggtggtttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaacattgattcaatggggtg |
47928245 |
T |
|
| Q |
271 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagcaagtggtcgatttggg |
359 |
Q |
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| T |
47928244 |
gacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaacacagatgggtagtggagatgcagcaagtggtcgatttggg |
47928156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 171 - 344
Target Start/End: Complemental strand, 47918579 - 47918409
Alignment:
| Q |
171 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
270 |
Q |
| |
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||||||||||||| | ||||| |||| || |||||||||||||||| || | ||||| ||||| ||||| | |||| |||||||||||||||||| |
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| T |
47918579 |
aactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaaagttctgcatcattggttcaatggggtg |
47918480 |
T |
|
| Q |
271 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagca |
344 |
Q |
| |
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||||||||||||||||| | || |||| || |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
47918479 |
gacaagtgtttagttatgaggtcaaaaaaa---ctcctcacactggaacacaaatgggtagtggagaagaagca |
47918409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 344
Target Start/End: Complemental strand, 47909416 - 47909243
Alignment:
| Q |
171 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
270 |
Q |
| |
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||||||||||||| ||| ||| |||| || ||||||||||||||||| | | || | ||||| || |||| |||||||| |||||||||||||| |
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| T |
47909416 |
aactggtggcttaaaattaagaataatataccagtaggttattggccagctgagttatttggtaatttgaaacacagtgcaacgacggttcaatggggtg |
47909317 |
T |
|
| Q |
271 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagca |
344 |
Q |
| |
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||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||| |||| |
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| T |
47909316 |
gacaagtatttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
47909243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 47919356 - 47919317
Alignment:
| Q |
36 |
accaacaatatgaaatcaacgttggaatattttgggtaat |
75 |
Q |
| |
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| T |
47919356 |
accaacaatatgaaatcaacgttggaatatttcgggtaat |
47919317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 47928472 - 47928430
Alignment:
| Q |
38 |
caacaatatgaaatcaacgttggaatattttgggtaataatta |
80 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
47928472 |
caacaatatgaaatcaatgttggaatatttcaggtaataatta |
47928430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 47909559 - 47909519
Alignment:
| Q |
38 |
caacaatatgaaatcaacgttggaatattttgggtaataat |
78 |
Q |
| |
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| T |
47909559 |
caacaatatgaaataaacgttggaatatttcaggtaataat |
47909519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 3861330 - 3861366
Alignment:
| Q |
241 |
aacatagtgcaacattggttcaatggggtggacaagt |
277 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
3861330 |
aacatagtgccacattggttcaatggggtggacaagt |
3861366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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