View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_low_5 (Length: 349)
Name: NF15074_low_5
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 9795056 - 9794730
Alignment:
| Q |
7 |
agagatgaagacaaatggggtaaccccagatttagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggactt |
106 |
Q |
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| T |
9795056 |
agagatgaagacaaatggggtaaccccagatttagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggactt |
9794957 |
T |
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| Q |
107 |
atgccggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagacta |
206 |
Q |
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| T |
9794956 |
gtgctggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagacta |
9794857 |
T |
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| Q |
207 |
gaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtagcaagggttttgtttct |
306 |
Q |
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| T |
9794856 |
gaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtgtcaagggttttgttttt |
9794757 |
T |
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| Q |
307 |
gagtggtagatttggtaaagggaaaga |
333 |
Q |
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| T |
9794756 |
gagtggtagatttggtaaagggaaaga |
9794730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 45145979 - 45146305
Alignment:
| Q |
7 |
agagatgaagacaaatggggtaaccccagatttagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggactt |
106 |
Q |
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| T |
45145979 |
agagatgaagacaaatggggtaaccccagatatagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggactt |
45146078 |
T |
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| Q |
107 |
atgccggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagacta |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146079 |
gtgcaggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagacta |
45146178 |
T |
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| Q |
207 |
gaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtagcaagggttttgtttct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
45146179 |
gaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtgacaagggttttgtttat |
45146278 |
T |
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| Q |
307 |
gagtggtagatttggtaaagggaaaga |
333 |
Q |
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||||||||||||||||||||||||||| |
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| T |
45146279 |
gagtggtagatttggtaaagggaaaga |
45146305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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