View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15074_low_6 (Length: 335)

Name: NF15074_low_6
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15074_low_6
NF15074_low_6
[»] chr3 (6 HSPs)
chr3 (118-335)||(53492989-53493205)
chr3 (129-335)||(16072156-16072362)
chr3 (251-335)||(53500922-53501006)
chr3 (8-104)||(53492845-53492941)
chr3 (8-104)||(53500796-53500892)
chr3 (8-104)||(16071999-16072095)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 118 - 335
Target Start/End: Original strand, 53492989 - 53493205
Alignment:
Q  118 atgtatgaagaaagcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctatagctagctaat 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53492989 atgtatgaagaa-gcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctatagctagctaat 53493087  T
Q  218 caagagtataaaataattacaatatacataaatgcattcaaatcattgagaaacatacttgcaaagtctcccatatttccactgccgatggtctcagaat 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493088 caagagtataaaataagtacaatatacataaatgcattcaaatcattgagaaacatacttgcaaagtctcccatatttccactgccgatggtctcagaat 53493187  T
Q  318 atataaaccagaaatatc 335  Q
    ||||||||||||||||||    
T  53493188 atataaaccagaaatatc 53493205  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 129 - 335
Target Start/End: Original strand, 16072156 - 16072362
Alignment:
Q  129 aagcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctatagctagctaatcaagagtataa 228  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| ||  | |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  16072156 aagcgtagttttaccaaaaactaaaacatcaccatttggaaagaatcataaattttatttattctgcatcaactccatagctagctaatcaagagtataa 16072255  T
Q  229 aataattacaatatacataaatgcattcaaatcattgagaaacatacttgcaaagtctcccatatttccactgccgatggtctcagaatatataaaccag 328  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  16072256 aataagtacaatatatataaatgcattcaaatcgttgagaaacatacttgcaaagtctcccatatctctactgcagatggtctcagaatatataaaccag 16072355  T
Q  329 aaatatc 335  Q
    |||||||    
T  16072356 aaatatc 16072362  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 53500922 - 53501006
Alignment:
Q  251 gcattcaaatcattgagaaacatacttgcaaagtctcccatatttccactgccgatggtctcagaatatataaaccagaaatatc 335  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53500922 gcattcaaatcgttgagaaacatacttgcaaagtctcccatatttccactgccgatggtctcagaatatataaaccagaaatatc 53501006  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 53492845 - 53492941
Alignment:
Q  8 aaacatagggaagtagcagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  53492845 aaacatagggaagtagcagttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgagatatgaaagcaactctcagc 53492941  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 53500796 - 53500892
Alignment:
Q  8 aaacatagggaagtagcagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc 104  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||| ||||||||||||||||||||    
T  53500796 aaacatggggaagtagcagttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgaaatatgaaagcaactctcagc 53500892  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 16071999 - 16072095
Alignment:
Q  8 aaacatagggaagtagcagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc 104  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||| ||        |||||||||||||||||||||||||||||||||||||||    
T  16071999 aaacatagggaagtagcagctctcaacattcattttctttatctctggattaaaaaaagcctgcacatttgtttgagatatgaaagcaactctcagc 16072095  T

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