View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_low_7 (Length: 327)
Name: NF15074_low_7
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 37131240 - 37130949
Alignment:
| Q |
17 |
aatattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37131240 |
aatattcaggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
37131141 |
T |
|
| Q |
117 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaaagtagaggcaattgtggcatggaattatggtgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37131140 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaaagtagaggcaattgtggcatggaattatggtgct |
37131041 |
T |
|
| Q |
217 |
cctaattaccctgtctatgagataaggaactcatatcaatatgaggacccttcatgttccatcatgtgaaagccatcaacaatatgtatact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37131040 |
cctaattaccctgtctatgagataaggaactcatatcaatatgaggacccttcatgttccatcatgtgaaagccatcaacaatatgtatact |
37130949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 37119516 - 37119331
Alignment:
| Q |
19 |
tattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaa |
118 |
Q |
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||||||||||| ||| || ||||| || ||||||| | ||||||||||||||||||||| |||||||||||||| ||| || |||||||| ||| || | |
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| T |
37119516 |
tattcaggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
37119417 |
T |
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| Q |
119 |
gaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaaagtagaggcaattgtggcatgg |
204 |
Q |
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| T |
37119416 |
gaaagaaattctgtcatgcagatttggtgagtgttggtgaagttgaaaagaaagaagaaaagaaagaagaggcaattgtagcatgg |
37119331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 37135156 - 37135323
Alignment:
| Q |
17 |
aatattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
116 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||| ||||| |||||| | || || ||||||| ||| ||||||| || |
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| T |
37135156 |
aatattcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
37135255 |
T |
|
| Q |
117 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaaag |
184 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||| | || |||||||||||||||||||||| |
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| T |
37135256 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaag |
37135323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 37125179 - 37125064
Alignment:
| Q |
17 |
aatattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
116 |
Q |
| |
|
|||||| |||||| ||| || |||||||||||||| | | ||||||| |||| ||||| ||||||||| ||||||| |||||||||||||||| |||||| |
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| T |
37125179 |
aatatttaggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgct |
37125080 |
T |
|
| Q |
117 |
aagaaagaaattctgt |
132 |
Q |
| |
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|||||||||||||||| |
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| T |
37125079 |
aagaaagaaattctgt |
37125064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 1193918 - 1194083
Alignment:
| Q |
17 |
aatattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
116 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
1193918 |
aatattcaggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgct |
1194017 |
T |
|
| Q |
117 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |
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|
| T |
1194018 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtgaagtggaaaagaaagaggaaaagaa |
1194083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 31297123 - 31296961
Alignment:
| Q |
17 |
aatattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
116 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||| ||| | |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
31297123 |
aatattcaggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgct |
31297024 |
T |
|
| Q |
117 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaa |
179 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||| |
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|
| T |
31297023 |
aagaaagaaattatgtcatgcagaattggtgagtgttggtgaagtggaaaagaaagaggaaaa |
31296961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 20269088 - 20269255
Alignment:
| Q |
17 |
aatattcaggagttgaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
116 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||||| ||||||||||||||||| ||||| |||||| | || || ||||||| ||| ||||||| || |
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| T |
20269088 |
aatattcaggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
20269187 |
T |
|
| Q |
117 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaaag |
184 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||| | || |||||||||||||||||||||| |
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| T |
20269188 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaag |
20269255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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