View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_12 (Length: 443)
Name: NF15075_high_12
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 46 - 427
Target Start/End: Complemental strand, 8594974 - 8594593
Alignment:
| Q |
46 |
ctgtcgagtgacaagcttgctatgttccatgaaaaaatctacattcgtgaacaaaggatgcaaactaacagaaaagattatagcaatgacgccgtgatgg |
145 |
Q |
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| T |
8594974 |
ctgtcgagtgacaagcttgctatgttccatgaaaaaatctacattcgtgaacaaaggatgcaaattaacagaaaagattatagcaatgacgccgtgatgg |
8594875 |
T |
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| Q |
146 |
ttcataaatattccgtagataaatttcataaggtttttgtgaagttgaaatgcaatatgtaaaacaattttcgcgcgcatgagcttgcttatcaatagtg |
245 |
Q |
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| T |
8594874 |
ttcataaatattccgtaaataaatttcataaggtttttgtgaggttgaaatgcaatatgtaaaacaattttcgcgcgcatgcgcttgcttatcaatagtg |
8594775 |
T |
|
| Q |
246 |
ttgtcaatcgcaaatcgcataaaatagtgatgtgttcaaattccactacaatatagtgctacagaatccccttttaagaattacatggtattattgtatt |
345 |
Q |
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| T |
8594774 |
ttgtcaatcgcaaatcacataaaatagtgatgtgttcaaattccactacaatatagcgctacagaatacccttttaagaattacatggtattattgtatt |
8594675 |
T |
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| Q |
346 |
gccttattcaaggttttattcaataactcttacttgcaaatgctaatcatgtttttaatccttgatgcttcactatgtaaat |
427 |
Q |
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| T |
8594674 |
gccttattcaaggttttattcaataactcttacttgcaaatgctaatcatgtttttaatccttgatgcttcactatgtaaat |
8594593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 27010110 - 27010049
Alignment:
| Q |
234 |
ttatcaatagtgttgtcaatcgcaaatcgcataaaatagtgatgtgttcaaattccactaca |
295 |
Q |
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| T |
27010110 |
ttatcaatagtgttgtcaatcacaaattgcattaaatagtgatttgttcaaattctactaca |
27010049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 3015672 - 3015643
Alignment:
| Q |
266 |
aaaatagtgatgtgttcaaattccactaca |
295 |
Q |
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| T |
3015672 |
aaaatagtgatgtgttcaaattccactaca |
3015643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 8856893 - 8856831
Alignment:
| Q |
244 |
tgttgtcaatcgcaaatcgcataaaatagtgatgtgttcaaattccactacaatatagtgcta |
306 |
Q |
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| T |
8856893 |
tgttgtcaatcacagatcgcatgaaatagcggtttgttcaaattccactacaatacagtgcta |
8856831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 15794184 - 15794120
Alignment:
| Q |
242 |
agtgttgtcaatcgcaaatcgcataaaatagtgatgtgttcaaattccactacaatatagtgcta |
306 |
Q |
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| T |
15794184 |
agtgctgtcaatcgcataccgcagaaaatagtgatttgtttgaattccactacacaatagtgcta |
15794120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 19868807 - 19868746
Alignment:
| Q |
333 |
gtattattgtattgccttattcaaggttttattcaataactcttacttgcaaatgctaatcat |
395 |
Q |
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| T |
19868807 |
gtattattgtattgccttattcaagg-ttggctcaattacttttacttccaaatgctaatcat |
19868746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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