View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_14 (Length: 420)
Name: NF15075_high_14
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 1049397 - 1049800
Alignment:
| Q |
1 |
ctggaagggtttcaaattcaggtatgtatctatttcgtcatatcattatttattatgtaaataaatgtgaccggaaggtctaaccatctgtgtcaacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1049397 |
ctggaagggtttcaaattcaggtatgtatctatttcgtcatatcattatttattatgtaaataaatgtgaccggaaggtctaaccatctgtgtcaacctc |
1049496 |
T |
|
| Q |
101 |
aattggctaagatcatcaatttttaacatagacctagcataattttagcattaccttgctcaaatataacatgctcaaaggcggtatatttttctgtcaa |
200 |
Q |
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| T |
1049497 |
aattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaaatataacatgctcaaaggcggtatatttttctgtcaa |
1049596 |
T |
|
| Q |
201 |
atttggcatgttggaagagtttcaaattcaggtatttatttatttgctcaaatcattagta-tttctttttcctttgataaaaataaaattttgattagg |
299 |
Q |
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| T |
1049597 |
atttggcatgttggaagagtttcaaattcagctatttatttatttgctctaatcattagtattttttttttcctttgataaaaataaaattttgattagg |
1049696 |
T |
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| Q |
300 |
tgacacacttccaattcaaaactggcgtgaacggaatgtttaactatctgtgcctacaccaattggttcaaatcatcagcttttatttaacatagaccta |
399 |
Q |
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| T |
1049697 |
tgacacacttccaattcaaaactggtgtgaacggaatgtttaactatatgtgcctacaccaattggttcaaatcatcagcttttatttaacatagaccta |
1049796 |
T |
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| Q |
400 |
ttat |
403 |
Q |
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|||| |
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| T |
1049797 |
ttat |
1049800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 1043304 - 1043484
Alignment:
| Q |
2 |
tggaagggtttcaaattcaggtatgta---tctatttcgtcatatcattatttattatgtaaataaatgt------gaccggaaggtctaaccatctgtg |
92 |
Q |
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| T |
1043304 |
tggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagttggagtgagctgaaggtctaaccatcaatg |
1043403 |
T |
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| Q |
93 |
tcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattaccttgctcaaatataacatg |
173 |
Q |
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| T |
1043404 |
tcaacccaaattggttaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaaatataacatg |
1043484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 1043268 - 1043327
Alignment:
| Q |
176 |
caaaggcggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcaggtat |
235 |
Q |
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| T |
1043268 |
caaaggcggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtat |
1043327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 1049363 - 1049444
Alignment:
| Q |
177 |
aaaggcggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcaggtatttatttatttgctcaaatcatta |
258 |
Q |
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| T |
1049363 |
aaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctatttcgtcatatcatta |
1049444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 1070331 - 1070378
Alignment:
| Q |
176 |
caaaggcggtatatttttctgtcaaatttggcatgttggaagagtttc |
223 |
Q |
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| T |
1070331 |
caaaggcggtgtatttttctgtcaaatttggcatgttggaagagtttc |
1070378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 1032876 - 1032934
Alignment:
| Q |
192 |
ttctgtcaaatttggcatgttggaagagtttcaaattcaggtatttatttatttgctca |
250 |
Q |
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| T |
1032876 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttatttcctca |
1032934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 1641783 - 1641724
Alignment:
| Q |
183 |
ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcaggtatttattta |
242 |
Q |
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| T |
1641783 |
ggtatattcttttgtcagatttggcatggtggaagggcttctaattcaggtatttattta |
1641724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 1052199 - 1052249
Alignment:
| Q |
192 |
ttctgtcaaatttggcatgttggaagagtttcaaattcaggtatttattta |
242 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| |||| |||||| |
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| T |
1052199 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
1052249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 1065046 - 1065086
Alignment:
| Q |
195 |
tgtcaaatttggcatgttggaagagtttcaaattcaggtat |
235 |
Q |
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| T |
1065046 |
tgtcagatttggcatgttggaagagtttctgattcaggtat |
1065086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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