View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_high_21 (Length: 391)
Name: NF15075_high_21
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 8296924 - 8296670
Alignment:
| Q |
1 |
caaaacaaattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaactcgttaattaagttggaatcaattgagaaactgatttag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
8296924 |
caaaacaaattcaacaacatttgcatctcctcccctaaagttgtcggaagtagaaagaaactcataaaataagttggaatcaattgagaaactgatttaa |
8296825 |
T |
|
| Q |
101 |
ttagtacctctcttcttgcaatggataaatgttttcctgaccaattttgtattctctcttccaaatacggtctcgatggtaaacccaaatattttcctga |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8296824 |
ttagtacctctcttcctgcaatggataaatgttttcatgaccaattttgtattctctcttccaaatgcggtctcgatggtaaacccaaatattttcctga |
8296725 |
T |
|
| Q |
201 |
gcctatactctctgaaactcgtaacattctcttcaccatctccctagtagtgtga |
255 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8296724 |
gcctatactctctgaaacttgtaaaattctcttcaccatctccctagtcgtgtga |
8296670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 14344127 - 14343997
Alignment:
| Q |
25 |
atctcctcccctaaagttgtcggaagtagaaaggaactcgttaattaagttggaatcaattgagaaactgatttagttagtacctctcttcttgcaatgg |
124 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||| | || || ||||| |||||||||| |||||||||| | ||||||||||||| || | | |
|
|
| T |
14344127 |
atctcctcacctaaagttgtcaaaagtagaaataaactcataaaatatgttggtatcaattgagcaactgatttaataagtacctctcttcaagctttag |
14344028 |
T |
|
| Q |
125 |
ataaatgttttcctgaccaattttgtattct |
155 |
Q |
| |
|
|||| || |||||| |||||||||||||||| |
|
|
| T |
14344027 |
ataagtgctttcctaaccaattttgtattct |
14343997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 15162500 - 15162650
Alignment:
| Q |
8 |
aattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaactcgtt-aat-taagttggaatcaattgagaaactgatttagttagt |
105 |
Q |
| |
|
||||||||| | |||| |||| || |||||||||||||| |||| |||||||||| | ||| || |||||||||||||||| ||| | ||| | ||| |
|
|
| T |
15162500 |
aattcaacattttttgaatcttttctcctaaagttgtcgggagtataaaggaactcatacaatatatgttggaatcaattgagcaacgaacttaataagt |
15162599 |
T |
|
| Q |
106 |
acctctcttcttgcaatggataaatgttttcctgaccaattttgtattctc |
156 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||| |||||||||| |
|
|
| T |
15162600 |
acctctcttccaactttagataaatgttttcctgaccaatgttgtattctc |
15162650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University