View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_high_24 (Length: 347)
Name: NF15075_high_24
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_24 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 10410860 - 10411169
Alignment:
| Q |
16 |
caggaaccttgtcatcttagtcttcaacaggaatgataacttgcataacaagtaatctctaaaagcaggaatgatatcagcaaattatgagagatgttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10410860 |
caggaaccttgtcatcttagtcttcaacaggaatgataacttgcataacaagtaatct--aaaagcaggaatgatatcagcaaattatgagagatgttcc |
10410957 |
T |
|
| Q |
116 |
aatgaaaatttgtgatataatcactcacatatgtgggaagaatactcataacatcagaattcaaatttagagtttttgtaaggggtcccgcatcaagagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10410958 |
aatgaaaatttgtgatataatcactcacatatgtgggaagaatactcataacatcagaattcaaattt--------------------cgcatcaagagt |
10411037 |
T |
|
| Q |
216 |
cttgccatgtgtttgctatttccaattaaccaggtagaattctcaacaatagtcacaaattctgctttgacattagtcctaaactcttaaccaagagaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10411038 |
cttgccatgtgtttgctatttccaattaaccaggtagaattctcaacaatagtcacaaattctgctttgacattagtccaaaactcttaaccaagagaat |
10411137 |
T |
|
| Q |
316 |
aaaaggactaaacaacccttagcatagttatt |
347 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
10411138 |
aaaaggagtaaacaacccttagcatagttatt |
10411169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University