View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_27 (Length: 320)
Name: NF15075_high_27
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 404381 - 404085
Alignment:
| Q |
1 |
aagcttgagattaacaagggttgtacaacgcagaatgttggtaggaaagtgagctcgtctaggctcccaagtattgatagcatgaatagagagatacatt |
100 |
Q |
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| T |
404381 |
aagcttgagattaacaagggttgtacaacgcagaatgttggtaggaaagtgagctcgtctaggctcccaagtattgatagcatgaatagagagatacatt |
404282 |
T |
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| Q |
101 |
atcagcatatatagttgatccatttgttgaggaatttgaaatgaatcgtattcaatgtcgaggaagaaactgttgatggaatgaaaaccaacgagttctc |
200 |
Q |
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| T |
404281 |
aacagcatatatagttgaaccatttgttgaggaatttgaaatgaattgtattcaatgtcgaggaagaaactgttgatggaatgaaaaccaacgagttctc |
404182 |
T |
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| Q |
201 |
gctcaagaaacatggaggaaaaaatatggttgaaaagctgaagtctataacgggaacgaaaggccatagaggacgaatgttccatctcttggagaga |
297 |
Q |
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| T |
404181 |
gctcaagaaaaatggaggaaaaaatatggttgaaacgctgaagtctataacgggaacgaaaggccataggggacgaatgttccatctcttggagaga |
404085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 975456 - 975497
Alignment:
| Q |
143 |
gaatcgtattcaatgtcgaggaagaaactgttgatggaatga |
184 |
Q |
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| T |
975456 |
gaatcgtattcaatgtcaaggatgaaagtgttgatggaatga |
975497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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