View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15075_high_3 (Length: 767)

Name: NF15075_high_3
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15075_high_3
NF15075_high_3
[»] chr7 (2 HSPs)
chr7 (13-759)||(31067771-31068513)
chr7 (452-564)||(41491762-41491874)
[»] chr2 (1 HSPs)
chr2 (20-130)||(4755293-4755403)
[»] chr1 (2 HSPs)
chr1 (94-147)||(30056753-30056808)
chr1 (13-98)||(37073723-37073808)
[»] chr8 (1 HSPs)
chr8 (85-155)||(36316970-36317042)
[»] chr6 (1 HSPs)
chr6 (82-147)||(6321631-6321696)


Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 13 - 759
Target Start/End: Original strand, 31067771 - 31068513
Alignment:
Q  13 acattattcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaacaaaattcattaatc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31067771 acattattcatttataattttctaacagttgtatctaataaatactcattttcttcaattcaacactttacacaaatttcgtaaacaaaattcattaatc 31067870  T
Q  113 atatgtcaataactctatcattatattttaatattctgatattnnnnnnnncacggatcctctaaaaacttgttcctcacttgcttggcgtccatttcac 212  Q
        |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31067871 ----gtcaataactctatcattatattttaatattctgatattaaaaaaaacacggatcctctaaaaacttgttcctcacttgcttggcgtccatttcac 31067966  T
Q  213 ttaaatgaggagtcacataggtttcgaccaactcaaaattgaacgttgcaaaagggaaaaaagttaggggaatgttgnnnnnnnaataggagccgaactc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  31067967 ttaaatgaggagtcacataggtttcgaccaactcaaaattgaacgttgcaaaagggaaaaaagttaggggaatgttgtttttttaataggagccgaactc 31068066  T
Q  313 acaactagtggaaagttaggggaacaaaagtgtgtttaaacctattatttaaaaacgtcctctccctttgaatattgttttaattgcttcatttttagct 412  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31068067 ataactagtggaaagttaggggaacaaaagtgtgtttaaacctattatttaaaaacgtcctctccctttgaatattgttttaattgcttcatttttagct 31068166  T
Q  413 tctcatgaatttttaattttaagcttcatgttgcttcattttatttccattgctcttgtcaaatgaatattttttaattccnnnnnnnggattgttgctc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  31068167 tctcatgaatttttaattttaagcttcatgttgcttcattttatttccattgctcttgtcaaatgaatattttttaattccaaaaaaaggattgttgctc 31068266  T
Q  513 tttgtttcatatttgcattctcggctataacttttgcaattcattgtttgctaaccataatattctatcttcatctttcgacaaataaacaatttaaacg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31068267 tttgtttcatatttgcattctcggctataacttttgcaattcattgtttgctaaccataatattctatcttcatctttcgacaaataaacaatttaaacg 31068366  T
Q  613 aggaaaacaaatagattaaagaaattaaagcatataagatcaagaattccatatctatgttggatcttgaaggatttttggtatgttggtttttgaatat 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31068367 aggaaaacaaatagattaaagaaattaaagcatataagatcaagaattccatatctatgttggatcttgaaggatttttggtatgttggtttttgaatat 31068466  T
Q  713 ttttggtgataagattagatgttgttgttgatgatggtgtgatgatg 759  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  31068467 ttttggtgataagattagatgttgttgttgatgatggtgtggtgatg 31068513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 41491762 - 41491874
Alignment:
Q  452 tttatttccattgctcttgtcaaatgaatattttttaattccnnnnnnnggattgttgctctttgtttcatatttgcattctcggctataacttttgcaa 551  Q
    ||||||||||||||||||||||||||| ||||||||| ||||       | |||||||||||||| ||  |||||||||||| ||| ||||||| |||||    
T  41491762 tttatttccattgctcttgtcaaatgattattttttatttccaaaaaaagaattgttgctctttggtttgtatttgcattctgggccataacttctgcaa 41491861  T
Q  552 ttcattgtttgct 564  Q
    |||||||||||||    
T  41491862 ttcattgtttgct 41491874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 4755293 - 4755403
Alignment:
Q  20 tcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaacaaaattcattaatcatatgtc 119  Q
    |||||||||||||| ||| | |  ||||||||||||||||| ||| | ||||||||||| | ||||||||||| |||| | || |||||||| || | ||    
T  4755293 tcatttataattttttaatattattatctaataaatactcaatttttccaactcaacacctcacacaaatttcttaaatagaactcattaattatttatc 4755392  T
Q  120 aataactctat 130  Q
    ||||| |||||    
T  4755393 aataagtctat 4755403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 30056753 - 30056808
Alignment:
Q  94 taaacaaaattcattaatcatatgtcaataactc--tatcattatattttaatatt 147  Q
    ||||||||||||||||||| ||| ||||||||||  ||||||||||||| ||||||    
T  30056753 taaacaaaattcattaatcctatatcaataactctatatcattatatttcaatatt 30056808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 37073808 - 37073723
Alignment:
Q  13 acattattcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaac 98  Q
    |||| ||| |||||||||||| ||| | | |||||||||||| ||||| ||||| |||| |||||| | |||||||| || |||||    
T  37073808 acatcatttatttataattttttaatactagtatctaataaacactcaatttctgcaacccaacacctcacacaaatatcttaaac 37073723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 36317042 - 36316970
Alignment:
Q  85 caaatttcgtaaacaaaattcattaatcatatgtcaataactct--atcattatattttaatattctgatatt 155  Q
    |||||||| ||||| ||| ||||||||||||| ||||||| |||  ||||||  ||||||||||||| |||||    
T  36317042 caaatttcttaaacgaaactcattaatcatatatcaataattctacatcatttcattttaatattctaatatt 36316970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 6321696 - 6321631
Alignment:
Q  82 acacaaatttcgtaaacaaaattcattaatcatatgtcaataactctatcattatattttaatatt 147  Q
    ||||||||||| ||||||| || || |||| |||| ||||||||| |||||||| |||| ||||||    
T  6321696 acacaaatttcttaaacaagatccactaattatatatcaataactatatcattacatttcaatatt 6321631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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