View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15075_high_30 (Length: 308)

Name: NF15075_high_30
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15075_high_30
NF15075_high_30
[»] chr6 (10 HSPs)
chr6 (133-294)||(28144056-28144217)
chr6 (14-80)||(28144271-28144337)
chr6 (133-194)||(5131578-5131640)
chr6 (137-194)||(34256452-34256509)
chr6 (133-185)||(31113881-31113933)
chr6 (133-193)||(33301380-33301440)
chr6 (137-192)||(8519048-8519103)
chr6 (137-194)||(6405884-6405941)
chr6 (16-69)||(34256331-34256384)
chr6 (134-190)||(8706819-8706875)
[»] chr7 (9 HSPs)
chr7 (133-193)||(21959464-21959524)
chr7 (14-69)||(21959346-21959401)
chr7 (140-194)||(19802014-19802068)
chr7 (138-190)||(4340317-4340369)
chr7 (138-190)||(48477173-48477225)
chr7 (14-69)||(19802139-19802194)
chr7 (133-190)||(3079281-3079338)
chr7 (133-190)||(3080630-3080687)
chr7 (138-190)||(42786758-42786810)
[»] chr4 (11 HSPs)
chr4 (133-193)||(13701733-13701793)
chr4 (133-193)||(13712226-13712286)
chr4 (134-194)||(5579362-5579422)
chr4 (138-195)||(4851809-4851866)
chr4 (138-190)||(2895400-2895452)
chr4 (138-190)||(5599025-5599077)
chr4 (133-185)||(6735997-6736049)
chr4 (133-194)||(1505114-1505176)
chr4 (138-190)||(5908271-5908323)
chr4 (14-69)||(5579243-5579298)
chr4 (133-191)||(31666527-31666587)
[»] scaffold0043 (1 HSPs)
scaffold0043 (134-193)||(70388-70447)
[»] chr2 (3 HSPs)
chr2 (137-196)||(31314411-31314470)
chr2 (133-193)||(31347639-31347701)
chr2 (138-186)||(2696706-2696754)
[»] chr8 (4 HSPs)
chr8 (137-198)||(5556887-5556948)
chr8 (133-193)||(20811274-20811334)
chr8 (133-194)||(4844677-4844736)
chr8 (16-69)||(5557017-5557070)
[»] chr3 (11 HSPs)
chr3 (137-194)||(18110859-18110916)
chr3 (133-193)||(28034109-28034169)
chr3 (133-193)||(37489143-37489203)
chr3 (133-194)||(2747330-2747391)
chr3 (137-193)||(14521906-14521962)
chr3 (14-69)||(14521785-14521840)
chr3 (133-190)||(5835058-5835115)
chr3 (16-69)||(19360008-19360061)
chr3 (133-190)||(19440502-19440559)
chr3 (137-193)||(19360131-19360187)
chr3 (134-178)||(11418187-11418231)
[»] scaffold0158 (4 HSPs)
scaffold0158 (137-195)||(37708-37766)
scaffold0158 (137-193)||(251-307)
scaffold0158 (14-69)||(129-184)
scaffold0158 (14-69)||(37585-37640)
[»] chr1 (8 HSPs)
chr1 (133-199)||(22207070-22207136)
chr1 (133-190)||(15088034-15088091)
chr1 (133-190)||(22210642-22210699)
chr1 (133-190)||(22219392-22219449)
chr1 (133-190)||(7898769-7898827)
chr1 (133-193)||(44193684-44193744)
chr1 (136-190)||(14115800-14115854)
chr1 (133-193)||(51843715-51843775)
[»] chr5 (2 HSPs)
chr5 (137-194)||(41527646-41527703)
chr5 (16-69)||(41527771-41527824)
[»] scaffold0046 (1 HSPs)
scaffold0046 (139-194)||(89610-89665)
[»] scaffold0060 (1 HSPs)
scaffold0060 (134-185)||(45444-45495)
[»] scaffold0018 (1 HSPs)
scaffold0018 (133-190)||(66249-66307)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 133 - 294
Target Start/End: Complemental strand, 28144217 - 28144056
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacataaatcgagcccggattttcccgaacgattcgttcttga 232  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28144217 ccaatgccaattttaacatacatgctagatatcataggaaatttctagtaggggtgttacataaatcgagcccgaattttcccgaacgattcgttgttga 28144118  T
Q  233 tgattctcgctaaaccattgagttcaatcatttgtttgtggaagttgagcttttgttgctac 294  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28144117 tgattctcgctaaaccattgagttcaatcatttgtttgtggtagttgagcttttgttgctac 28144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 28144337 - 28144271
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggtacataagacgag 80  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  28144337 gaagtagaagtcgctgaaagtttcacgtcagtagtgttagtgttatttcagaggtatataagacgag 28144271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 5131578 - 5131640
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctagg-aaatttctagtaggggtgttacat 194  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5131578 ccaatgccaaatttaacacacatgctagatatcctaggtaaatttctagtaggggtgttacat 5131640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 34256452 - 34256509
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34256452 tgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacat 34256509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 31113881 - 31113933
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggg 185  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31113881 ccaatgccaagtttaacacacatgctagatatcctaggtaatttctagtaggg 31113933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 33301380 - 33301440
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33301380 ccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgttaca 33301440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 8519103 - 8519048
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttac 192  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  8519103 tgccaagtttaacacgcatgctagatatcctaggtaatgtctagtaggggtgttac 8519048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 6405941 - 6405884
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||    
T  6405941 tgccaagtttaacgcacatgctagatatcctatgtaatttctagtatgggtgttacat 6405884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 34256331 - 34256384
Alignment:
Q  16 agcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  34256331 agcagaagtcgcttgaagtttcgcgtcagtagtgttagtgttacttcagaggta 34256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 8706819 - 8706875
Alignment:
Q  134 caatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    ||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  8706819 caatgtcaagtttaacactcatgctagatatcctaggtgatttctagtaggggtgtt 8706875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 21959464 - 21959524
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21959464 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 21959524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 21959346 - 21959401
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21959346 gaagcagaagtcgctggaagtttcgcgtcagtagtgttagtgttatttcagaggta 21959401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 19802068 - 19802014
Alignment:
Q  140 caagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  19802068 caagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacat 19802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 4340369 - 4340317
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  4340369 gccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtt 4340317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 48477225 - 48477173
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  48477225 gccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 48477173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19802194 - 19802139
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  19802194 gaagcagaagtcgcttgaagtttcgcgtcagtagtgttagtgttacttcagaggta 19802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 3079281 - 3079338
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||    
T  3079281 ccaatgtcaagtttaacacacatgctagatatcataggtaatgtctagtaggggtgtt 3079338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 3080687 - 3080630
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||    
T  3080687 ccaatgccaagtttcacacacatgctagatatcataggtaatgtctagtaggggtgtt 3080630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 42786758 - 42786810
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    ||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  42786758 gccaagtttaacacaaatgctagatatcctaggtgatttctagtaggggtgtt 42786810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 13701793 - 13701733
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13701793 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtcggggtgttaca 13701733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 13712286 - 13712226
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13712286 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtcggggtgttaca 13712226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 5579362 - 5579422
Alignment:
Q  134 caatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5579362 caatgccaaatttagcacacatgctagatatcctaggaaatttctagtaggggtgttacat 5579422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 4851866 - 4851809
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacata 195  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  4851866 gccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcata 4851809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2895400 - 2895452
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2895400 gccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 2895452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 5599077 - 5599025
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  5599077 gccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 5599025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 6735997 - 6736049
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggg 185  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  6735997 ccaatgccaaatttaacacacatgctagatatcctaggtaatttctagtaggg 6736049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 1505176 - 1505114
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctagg-aaatttctagtaggggtgttacat 194  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  1505176 ccaatgccaaatttaacacacatgctagatatcctaggtaaatttctattagggatgttacat 1505114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 5908323 - 5908271
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||  |||||||||| |||||||    
T  5908323 gccaagtttaacacacatgctagatatcctaggtgatttctagtaagggtgtt 5908271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 5579243 - 5579298
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  5579243 gaagcagaagtcgctggaagtttcgcatcaattgtgttagtgttatttcagaggta 5579298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 31666527 - 31666587
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagata--tcctaggaaatttctagtaggggtgtta 191  Q
    |||||||||||||||||| | ||||||||||  ||||||| ||||||||||||||||||||    
T  31666527 ccaatgccaagtttaacataaatgctagataaatcctaggtaatttctagtaggggtgtta 31666587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 70388 - 70447
Alignment:
Q  134 caatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  70388 caatgccaagtttaacacacatgctagatatcctaggaaatgtctagtaggggtgttaca 70447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 31314470 - 31314411
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacataa 196  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31314470 tgccaagtttaacactcatgctagatatcctaggaaatttctagtaggggtgttacataa 31314411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 31347639 - 31347701
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagata--tcctaggaaatttctagtaggggtgttaca 193  Q
    |||||||||| ||||||||| ||||||||||  ||||||| ||||||||||||||||||||||    
T  31347639 ccaatgccaactttaacacaaatgctagataaatcctaggtaatttctagtaggggtgttaca 31347701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 2696706 - 2696754
Alignment:
Q  138 gccaagtttaacacacatgctagatatcctaggaaatttctagtagggg 186  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  2696706 gccaagtttaacacacatcctagatatcctaggtgatttctagtagggg 2696754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 5556948 - 5556887
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacataaat 198  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  5556948 tgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacataaat 5556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 20811274 - 20811334
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    |||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  20811274 ccaatgccaagtttaacacacatgctagatatcctacgtaaattctagtaggggtgttaca 20811334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 4844677 - 4844736
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  4844677 ccaatcccaagtttaacac--atgctagatatcctaggaaatttctagtaggggtgttacat 4844736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 5557070 - 5557017
Alignment:
Q  16 agcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  5557070 agcagaagtcgcttgaagtttcgcgtcagtagtgttagtgttacttcagaggta 5557017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 18110916 - 18110859
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18110916 tgccaagtttaacactcatgctagatatcctaggaaatttctagtaggggtgttacat 18110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 28034169 - 28034109
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28034169 ccaatgccaattttaacacacatgctagatatccttggaaatttctagtaggggtgttaca 28034109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 37489203 - 37489143
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  37489203 ccaatgccaagtttaacacacatgctagatatcctaggaaaattttagtaggggtgttaca 37489143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 2747330 - 2747391
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  2747330 ccaatgccaagtttaacatacattctagatatcctaggtaatttctagtaggggtgttacat 2747391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 14521906 - 14521962
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  14521906 tgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttaca 14521962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 14521785 - 14521840
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  14521785 gaagcagaagtcgcttgaagtttcgcgtcagtagtgttagtgttacttcagaggta 14521840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 5835115 - 5835058
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||    
T  5835115 ccaatgccaagtttaatactcatgctagatatcctaggtaatttatagtaggggtgtt 5835058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 19360008 - 19360061
Alignment:
Q  16 agcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  19360008 agcagaagtcgcttgaagtttcgcgtcagtagtgttagtgttacttcagaggta 19360061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 19440559 - 19440502
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  19440559 ccaatgccaagtttaacacacacgctagatatcctaggtaatttctagcagggatgtt 19440502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 19360131 - 19360187
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||    
T  19360131 tgccaagtttaacactcatgctagatatcgtatgtaatttctagtaggggtgttaca 19360187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 11418231 - 11418187
Alignment:
Q  134 caatgccaagtttaacacacatgctagatatcctaggaaatttct 178  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||    
T  11418231 caatgccaagtttaacgcacgtgctagatatcctaggtaatttct 11418187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 37708 - 37766
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacata 195  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  37708 tgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacata 37766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 251 - 307
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  251 tgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttaca 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 129 - 184
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||    
T  129 gaagcagaagtcgcttgaagtttcgcgtcaatagtgttagtgttacttcagaggta 184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 37585 - 37640
Alignment:
Q  14 gaagcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||| ||  | |||||||||||||||||||||||||| ||||||||||    
T  37585 gaagcagaagtcacttgaggtttcgcgtcagtagtgttagtgttacttcagaggta 37640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 22207136 - 22207070
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacataaatc 199  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |||||    
T  22207136 ccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttcacaaatc 22207070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 15088091 - 15088034
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  15088091 ccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtt 15088034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 22210699 - 22210642
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  22210699 ccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtt 22210642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 22219449 - 22219392
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  22219449 ccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtt 22219392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 7898827 - 7898769
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctagg-aaatttctagtaggggtgtt 190  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7898827 ccaatgccaaatttaacacacatgctagatatcctaggtaaatttctagtaggggtgtt 7898769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 44193684 - 44193744
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||    
T  44193684 ccaatgccaagtttaacacacgtactagatatcttaggaaatgtctagtaggggtgttaca 44193744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 14115800 - 14115854
Alignment:
Q  136 atgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| |||||||    
T  14115800 atgccaagtttaacacacatgctagatatcctaggtgatttctagtatgggtgtt 14115854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 51843775 - 51843715
Alignment:
Q  133 ccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttaca 193  Q
    ||||| |||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||||    
T  51843775 ccaataccaagtttaacacacacgctagatatcctaggtaatgtctagtaagggtgttaca 51843715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 41527703 - 41527646
Alignment:
Q  137 tgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  41527703 tgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacat 41527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 41527824 - 41527771
Alignment:
Q  16 agcagaagtcgctgaaagtttcgcgtcagtagtgttagtgttatttcagaggta 69  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  41527824 agcagaagtcgcttgaagtttcgcgtcagtagtgttagtgttacttcagaggta 41527771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 89665 - 89610
Alignment:
Q  139 ccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgttacat 194  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  89665 ccaagtttaacgcacatgctagatatcctagaaaatttctagtaggggtgttacat 89610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 45444 - 45495
Alignment:
Q  134 caatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggg 185  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  45444 caatgtcaagtttaacacacatgctagatatcctaggtaatttctagtaggg 45495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 66249 - 66307
Alignment:
Q  133 ccaatgccaagtttaacacac-atgctagatatcctaggaaatttctagtaggggtgtt 190  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  66249 ccaatgccaagtttaacacaccatgctagatattctaggtaatttctagtaggggtgtt 66307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University