View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_32 (Length: 285)
Name: NF15075_high_32
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_32 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 2682 - 2430
Alignment:
| Q |
13 |
aatataacaatatcacattctatagttgcagaagtagacaaatctattgtctatgtagtatttaggttccaccgtgcctcataaaaattcataacacgga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |
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| T |
2682 |
aatataacaatatcacattctatagttgcagaagtagacaaatctattgtctatgtagtatttaggttctactgtgcctcataaaaattcataacatgga |
2583 |
T |
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| Q |
113 |
tcatagatttcccaatcaacataaattccctttcataatcaaataaatacaatccactataatacattattccattcaagtgaattaagattgctaggaa |
212 |
Q |
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| T |
2582 |
tcatagatttcccaatcaacataaattccctttcataatcaaataaatacaatccactataatacattattccattcaagtgaattaagattgctaggaa |
2483 |
T |
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| Q |
213 |
tgtaccaactaggattggcacaaatggttaaacatttcgctcacatcgaccgt |
265 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2482 |
tgtaacaactaggattggcacaaatggttaaacatttcgctcacatcgaccgt |
2430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 21448854 - 21449106
Alignment:
| Q |
13 |
aatataacaatatcacattctatagttgcagaagtagacaaatctattgtctatgtagtatttaggttccaccgtgcctcataaaaattcataacacgga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |
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| T |
21448854 |
aatataacaatatcacattctatagttgcagaagtagacaaatctattgtctatgtagtatttaggttctactgtgcctcataaaaattcataacatgga |
21448953 |
T |
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| Q |
113 |
tcatagatttcccaatcaacataaattccctttcataatcaaataaatacaatccactataatacattattccattcaagtgaattaagattgctaggaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21448954 |
tcatagatttcccaatcaacataaattccctttcataatcaaataaatacaatccactataatacattattccattcaagtgaattaagattgctaggaa |
21449053 |
T |
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| Q |
213 |
tgtaccaactaggattggcacaaatggttaaacatttcgctcacatcgaccgt |
265 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449054 |
tgtaacaactaggattggcacaaatggttaaacatttcgctcacatcgaccgt |
21449106 |
T |
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