View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_35 (Length: 269)
Name: NF15075_high_35
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 44080930 - 44080680
Alignment:
| Q |
1 |
gaagagcaacatagtgatcagggtgtgtcttcatcacttcactagcagtgactggccaatacaacctttcttctttaccatttggttgttgtattacaag |
100 |
Q |
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| T |
44080930 |
gaagagcaacatagtgatcagggtgtgtcttcatcacttcactagcagtgactggccaatacaacctttcttctttaccatttggttgttgtattacaag |
44080831 |
T |
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| Q |
101 |
agttgctgtatcaatagcttgacaatttcccattatctctcacttcttctttttcttctccaagaagaggaaggatatataaataataagtaagatgcaa |
200 |
Q |
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| T |
44080830 |
agttgctgtatcaatagcttgacaatttcccattatctctcacttcttctttttcttctccaagaagaggaaggatatataaataataagtaagatgcaa |
44080731 |
T |
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| Q |
201 |
cggaatgttaaagtacttcctactagaatatttatagcaaccactcactct |
251 |
Q |
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| T |
44080730 |
cggaatgttaaagtacttcctactagaatatttatagcaaccactcactct |
44080680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 15407021 - 15407146
Alignment:
| Q |
8 |
aacatagtgatcagggtgtgtcttcatcacttcactagcagtgactggccaatacaacctttcttctttaccatttggttgttgtattacaagagttgct |
107 |
Q |
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| T |
15407021 |
aacatagtgaccaggattggttttcataacttcactagcagttactggccaatacaatctatctatcttcccacatggatgttggatcacaagaactgca |
15407120 |
T |
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| Q |
108 |
gtatcaatagcttgacaatttcccat |
133 |
Q |
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| T |
15407121 |
gcatcaacagcttgacaatttcccat |
15407146 |
T |
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