View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_40 (Length: 251)
Name: NF15075_high_40
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30970243 - 30970004
Alignment:
| Q |
1 |
tgttcagctcacttcatctctcaccgcggctcttcaactccatatattcgacatactttttcttatctatcttatggattgaaaggtctcattgaagcat |
100 |
Q |
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| T |
30970243 |
tgttcaactcacttcatctcacaccgcggctcttcaaatccatatattcgacattctttttcttgtctatcttatggattgaaaggtctcattgaagcat |
30970144 |
T |
|
| Q |
101 |
atttatagggagctaactcttgtgttgattttcttgctaacttgagtcaccgtggttctttctcatggaggacctcttcaatcttttgtccttctttggc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30970143 |
atttatagggagctaactcttgcgttgattttcttgctaacttgggtcaccgtggttctttctaatggaggacctcttcaatcttttgtccttctttggc |
30970044 |
T |
|
| Q |
201 |
tcttaagcttcgttttgattgaatgagatgtagagtccct |
240 |
Q |
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|||||||||||||||||||||| |||||||| |||||||| |
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| T |
30970043 |
tcttaagcttcgttttgattgagtgagatgtcgagtccct |
30970004 |
T |
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