View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_54 (Length: 229)
Name: NF15075_high_54
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 24258898 - 24258998
Alignment:
| Q |
113 |
ttcatatgaagagaaacgaggattgtggaagaaagagtcaacaacctgggaaagccgggagagtttttgttggatggtatattggattgcatccatgaaa |
212 |
Q |
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| T |
24258898 |
ttcatatgaagagaaacgaggattgtggaagaaagagtcaacaacctgggaaagccgggagagtttttgttggatggtatattggattgcatccatgaaa |
24258997 |
T |
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| Q |
213 |
t |
213 |
Q |
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| T |
24258998 |
t |
24258998 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24258775 - 24258872
Alignment:
| Q |
1 |
aaacaatcaaaccaaagattgnnnnnnncatcatttgtatcattgtaataaataagaagaaaagtatactatagtatagtgatgaagtggtagtgaaca |
99 |
Q |
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| T |
24258775 |
aaacaatcaaaccaaagattgaaaaaa-catcatttgtatcattgtaataaataagaagaaaagtatactatagtatagtgatgaagtggtagtgaaca |
24258872 |
T |
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