View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_57 (Length: 214)
Name: NF15075_high_57
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_57 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33580401 - 33580614
Alignment:
| Q |
1 |
catataccataacaagcgatttctattttggattcaaaattagcaactgtatttgcagtctaatgatgcaggctacaagcaatagatctatcaaaagcca |
100 |
Q |
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| T |
33580401 |
catataccataacaagcgatttgtattttggattcaaaattagcaactgtatttgcagtctaatgatgtaggctacaagcaatagatcaatcaaaagcca |
33580500 |
T |
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| Q |
101 |
aaagaagtaaaagtcattcaaagttatgctgaacaaccttgaattatcgcatcccagactgtgagcgctttccgcccaccttaaaaagtccttttggtat |
200 |
Q |
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| T |
33580501 |
aaagaagtaaaagtcattcaaagttatgctgaacaaccttgaattatcgcatcccagaccgtgagcgctttccgcccaccttaaaaagtccttttggtat |
33580600 |
T |
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| Q |
201 |
cccaaatacaacaa |
214 |
Q |
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| T |
33580601 |
cccaaatacaacaa |
33580614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 32355147 - 32355234
Alignment:
| Q |
127 |
tgctgaacaaccttgaattat-cgcatcccagactgtgagcgctttccgcccaccttaaaaagtccttttggtatcccaaatacaaca |
213 |
Q |
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| T |
32355147 |
tgctgaacaaccttgaattatacgcatccccgactgtatgcgctttccacactccttaaaaagtccttttgggcgcccaaatacaaca |
32355234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 32355029 - 32355117
Alignment:
| Q |
24 |
tattttggattcaaaattagcaactgtatttgcagtctaatgatgcaggctacaagcaatagatctatcaaaagccaaaagaagtaaaa |
112 |
Q |
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| T |
32355029 |
tattttcgattcaaaattagcccttgtatttgcagtctagtgatatatgccacaagcaataaatcaatccaaagccaaaagaagtaaaa |
32355117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17921387 - 17921500
Alignment:
| Q |
1 |
catataccataacaagcgatttctattttggattcaaaattagcaactgtatttgcagtctaatgatgcaggctacaagcaatagatctatcaaaagcca |
100 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||| | |||||||| |||||||| ||| | ||||||||||||| ||| ||| | || || |
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| T |
17921387 |
catataccataataagcaatttctattttggattcaaaattaaaacctgtatttacagtctaaggatatatgctacaagcaataaatcaatccatagtca |
17921486 |
T |
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| Q |
101 |
aaagaagtaaaagt |
114 |
Q |
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| T |
17921487 |
aaacaagtaaaagt |
17921500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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