View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_6 (Length: 533)
Name: NF15075_high_6
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 29719529 - 29719965
Alignment:
| Q |
17 |
gtgtggagtggaacacttaaattgaggccgaacaccgtatatagcttgaagttgtgatctaagatcctttatatcaaagtctaccccatagattggggat |
116 |
Q |
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| T |
29719529 |
gtgtggagtggaaaacttaaattgaggccgaacaccgtatatagcttgaagttgtgatctaagatcctttatatcaaagtctaccccatagattggggat |
29719628 |
T |
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| Q |
117 |
gtatcttgactctcaaaagctttaacaagatcaagttcaaaatgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaag |
216 |
Q |
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| T |
29719629 |
gtatcttgactctcaaaagctttaacaagatcaagttcaaaatgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaag |
29719728 |
T |
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| Q |
217 |
cagctaccatgtgcatcccattgaccttcccaaaagttcatttcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcac |
316 |
Q |
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| T |
29719729 |
cagctaccatgtgcatcccattggccttcccaaaagttcatttcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcac |
29719828 |
T |
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| Q |
317 |
actattgaaggaaaagaacagaacaattttattcaccatgcaaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttgg |
416 |
Q |
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| T |
29719829 |
actattgaaggaaaagaacagaacaattttattcaccatgcaaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttgg |
29719928 |
T |
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| Q |
417 |
aagcactaatactattaatttttctcatgtatatggt |
453 |
Q |
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| T |
29719929 |
aagcactaatactattaacttttctcatgtatatggt |
29719965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 24537858 - 24537587
Alignment:
| Q |
159 |
tgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaagcagctaccatgtgcatcccattgaccttcccaaaagttcatt |
258 |
Q |
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|||| |||||||||||||| |||||||||||| | | || |||||| |||| || ||||| |||||||| ||||||||| ||| |||||| |||||| |
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| T |
24537858 |
tgataaagatctatggccatttgaaaatatgcct-cttgattgaaattttcgtaaaagcaactaccatgcatatcccattgggctttccaaaa-ttcatt |
24537761 |
T |
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| Q |
259 |
-tcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcacactattgaaggaaaagaacagaacaattttattcaccatgc |
357 |
Q |
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|| || || | | |||||| | |||||| | |||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
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| T |
24537760 |
atcgtcaccatgctggaaatcgatccaaatacgcgtcaactccctttctttcattttacactattgaagaaaaagaacagaacaattttattcaccatat |
24537661 |
T |
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| Q |
358 |
aaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttggaagcactaatactat |
431 |
Q |
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| T |
24537660 |
aaataaaacaacaatgagattatttaatgtaaactcaaattcatatttaggaggtttggaagcactaatactat |
24537587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 447 - 523
Target Start/End: Original strand, 29722903 - 29722979
Alignment:
| Q |
447 |
atatggtttaaaggattaacctcggacaaatatcgataaattataacttcactattattaatgtgttgaagtattat |
523 |
Q |
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| T |
29722903 |
atatggtttaaaggattaacctcggacaaatatcgataaactataacttcactattattaatgtgtcgaagtattat |
29722979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 519
Target Start/End: Complemental strand, 24537509 - 24537429
Alignment:
| Q |
439 |
tctcatgtatatggtttaaaggattaacctcggacaaatatcgataaattataacttcactattattaatgtgttgaagta |
519 |
Q |
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|||||| ||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||||||| |||||| |
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| T |
24537509 |
tctcatatatatggtttaaaagattaacctccagaaagtattgttaaattataacttcactattattaatgtgtcgaagta |
24537429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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