View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_high_7 (Length: 504)
Name: NF15075_high_7
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 216 - 504
Target Start/End: Original strand, 27243496 - 27243784
Alignment:
| Q |
216 |
gatgcacataaaatcttggtcaattttctgcgctagagaaccaagagaagcacccactttggttgattgttttcgtgatcattggtaactcatttctcat |
315 |
Q |
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| T |
27243496 |
gatgcaaataaaatcttggtcaattttctgcgctagagaaccaagagaagcacccactttggttgatcgttttcgtgatcattggtaactcatttctcat |
27243595 |
T |
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| Q |
316 |
ttcctccnnnnnnnnnnnnnttatatgtaattgacttttcttgccccttgtgatttaatctgactttgcaattgatgaagatttaaagagtt-annnnnn |
414 |
Q |
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| T |
27243596 |
ttcctcc-aaaaaaaaataattacatgtaattgacttttcttgccccttttgatttaatctgactttgcaattgatgaagatttaaagagttctttttag |
27243694 |
T |
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| Q |
415 |
nnnnnnnnaacaatcaatgacaaagagttgaaaaaagacattctcttgcaggaagtcttggatccttggaacaatattcaccatacttct |
504 |
Q |
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| T |
27243695 |
ttttttttaacaatcaatgacaaagagttgaaaaaagacattctcttgcaggaagtcttggatccttggaacaatattcaccatacttct |
27243784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 27243281 - 27243465
Alignment:
| Q |
19 |
caaatggtagtaccaaatattcacgttttgatggaaaacacaatcttcactcaaaagtcaacttgcttaaccgtagggatatttggtactagatatcaag |
118 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
27243281 |
caaatggtagtcccaaatattcacgttttgatggcaaacacaatgttcactcaaaagtcaacttgcttaacctttgggatatttgg---tagatatcaag |
27243377 |
T |
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| Q |
119 |
cttcaaagatcaataattctaatcatcatcttagactccattccaaaattcaacatcacttctctgtttcacaacacagccatggatt |
206 |
Q |
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| T |
27243378 |
cttcaaaggttgataattccaatcattatctgagattcaattccaaaatccaacatcacttctctgtttcacaacacaaccatggatt |
27243465 |
T |
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