View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_17 (Length: 417)
Name: NF15075_low_17
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 264
Target Start/End: Original strand, 11504981 - 11505217
Alignment:
| Q |
28 |
ttatttttgaaagatgtaagaattatcatatttgcataggtgtccattgttcatgagacaatactcttttatggatggattgccacttaagacaggtatg |
127 |
Q |
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| T |
11504981 |
ttatttttgaaagatgtaagaattatcatatttgcataggtgtccagtgttcatgagacaatactcttttatggatggattgccacttaagacaggtatg |
11505080 |
T |
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| Q |
128 |
attccattttgatgatgggaataggtttcaagagattatattttaattatcttttgctaaaatcataatctgaatgtgatatatgttattcattttctta |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11505081 |
attccattttgatgatgggaataggtttcaagagattatattttaattatcttttgctaaaatcataatttgaatgtgatatatgttattcattttctta |
11505180 |
T |
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| Q |
228 |
tatctatacaatcgaagcggaaaaggttcttacttat |
264 |
Q |
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| T |
11505181 |
tatctatacaatcaaagcggaagagtttctttcttat |
11505217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 278 - 399
Target Start/End: Original strand, 11510821 - 11510942
Alignment:
| Q |
278 |
tcaccaatgattcaaacacgttaaaaacgctaatacctctggttctgtttctcttcaaaacctttacccctttcttctctcccttattctttcttacccc |
377 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||| | ||||||||||||| ||| |
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| T |
11510821 |
tcactaatgatttaaacacgttaaaaacgctaatacctctgattttgtttatcttcaaaagatttacccctttcttctctactttattctttcttatccc |
11510920 |
T |
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| Q |
378 |
atacacccataaacctcactac |
399 |
Q |
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||| |||||||||||||||||| |
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| T |
11510921 |
atagacccataaacctcactac |
11510942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 11505218 - 11505252
Alignment:
| Q |
189 |
atcataatctgaatgtgatatatgttattcatttt |
223 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
11505218 |
atcataatttgaatgtgatatatgttattcatttt |
11505252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 46009028 - 46009078
Alignment:
| Q |
54 |
catatttgcataggtgtccattgttcatgagacaatactcttttatggatg |
104 |
Q |
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|||||||||||||||||||| | ||| ||||| ||| |||||||||||||| |
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| T |
46009028 |
catatttgcataggtgtccaattttcttgagataatgctcttttatggatg |
46009078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 3077286 - 3077418
Alignment:
| Q |
153 |
tttcaagagattatattttaattatcttttgctaaaatcataatctgaatgtgatatatgttattcattttcttatatctatacaatcgaagcggaaaag |
252 |
Q |
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| T |
3077286 |
tttcaagagcttatattttaattatctat-gctaaaatcgtaatctgataatgctatatgttattcattttcttatatctatacaatggaaga--aaggg |
3077382 |
T |
|
| Q |
253 |
gttcttacttatttatgtctaagaatcaccaatgat |
288 |
Q |
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| T |
3077383 |
gttcttacttatctacttctaagaatcactaatgat |
3077418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 6097310 - 6097219
Alignment:
| Q |
54 |
catatttgcataggtgtccattgttcatgagacaatactcttttatggatgga-----ttgccacttaagacaggtatgattccattttgat |
140 |
Q |
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| T |
6097310 |
catatttgcataggtgtccaattttcttgagacaatgctcttttatggatggatgatcttgccacttgagacaggtatgattctattttgat |
6097219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 4636354 - 4636301
Alignment:
| Q |
54 |
catatttgcataggtgtccattgttcatgagacaatactcttttatggatggat |
107 |
Q |
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|||||||||||||||||||| | ||| ||||| | | ||||||||||||||||| |
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| T |
4636354 |
catatttgcataggtgtccaattttcttgagatagtgctcttttatggatggat |
4636301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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