View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_19 (Length: 398)
Name: NF15075_low_19
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 45307390 - 45307011
Alignment:
| Q |
1 |
tagattgttactgctgcttatttcatcagattttcttttctccttatgatcaggattctttctcatatattccatcaaattgtttctcaatgtgttgtaa |
100 |
Q |
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| T |
45307390 |
tagattgttactgctgcttatttcatcagattttcttttctccttatgatcaggattctttctcatatattccatcaaattgtttctcaatgtgttgtaa |
45307291 |
T |
|
| Q |
101 |
ttctcacacatctctgtcaacattcctgtcaacttcttgttttctgcactcactcgtttcagctcctccaccaaggcaccacttgactgaaatatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45307290 |
ttctcacacatctctgtcaacattcctgtcaacttcttgttttctgcactcactcgtttcagctcctccaccaaggcaacacttgactgaaatatcaata |
45307191 |
T |
|
| Q |
201 |
ttcatgcaacaatttaattagtnnnnnnnnnnnncttcatatatatagtattcataatgaactgattaataaagtaaccaaactaacttacctcttcttt |
300 |
Q |
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| T |
45307190 |
ttcatgcaac--tttaattagtaaaaaacaaaaacttcatatatctagtattcataatgaactgattaataaagtaaccaaactaacttacctcttcttt |
45307093 |
T |
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| Q |
301 |
tgcagaagatatactcatcatccctaatgagaaaaaattgttttccacctcatatttcttgaaacttacaggagcagcttgt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307092 |
tgcagaagatatactcatcatccctaatgagaaaaaattgttttccacctcatatttcttgaaacttacaggagcagcttgt |
45307011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 927893 - 927848
Alignment:
| Q |
63 |
tcatatattccatcaaattgtttctcaatgtgttgtaattctcaca |
108 |
Q |
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| T |
927893 |
tcatatattccatcaaatgacttctcaaagtgttgtaattctcaca |
927848 |
T |
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