View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_2 (Length: 773)
Name: NF15075_low_2
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 393 - 714
Target Start/End: Complemental strand, 34011796 - 34011471
Alignment:
| Q |
393 |
aatgagttttagatcaaagaagaagtcgtcggagctcaaactcacactatttgttggttcaatttcatctgtttgtattttggttgatagctgctgtgca |
492 |
Q |
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| T |
34011796 |
aatgagttttagatcaaagaagaagtcgtcggagctcaaactcacactatttgttggttcaatttcatctgtttgtattttggttgatagctgctgtgca |
34011697 |
T |
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| Q |
493 |
ggtgcctttactatgaa-ttaccacgttttcatgttgctcgtgatatcctattttttgatatagcccactactacagattaattcataatctttgatatt |
591 |
Q |
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| T |
34011696 |
ggtgcctttactatgaaattaccacgatttcatgttgctcgtgatatcctatttattgatatagcccactactacagattaattcataatctttggtatt |
34011597 |
T |
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| Q |
592 |
gttaaaagcatgctatgattggttgtaaatttgtaataaaccaatgacctgctataccttatcttagatatccctaacaaatcagtgtttagtgagttta |
691 |
Q |
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| T |
34011596 |
gttaaaagcatgctatgattggttgtaaatttgtaataaaccaatgacctgctataccttatcttagatatctctaacaaatcagtgtttagtgagttca |
34011497 |
T |
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| Q |
692 |
gtttga---aattaggctcggtaaag |
714 |
Q |
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| T |
34011496 |
gtttgaaataattaggctcggtaaag |
34011471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 34012179 - 34011897
Alignment:
| Q |
18 |
agtgttgcatgtttgaattaaaacttgagtgatgttgatcgggggccatggatggaggatatatgatcaannnnnnnnnnnnn--------atgaagaaa |
109 |
Q |
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| T |
34012179 |
agtgttgcatgtttgaattaaaacttgagtgatgttgatcgggggccatggatggaggatatatgatcagagagagagagagagagagagaatgaagaaa |
34012080 |
T |
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| Q |
110 |
aaatgaagtggttagttagttatattaagggaaatgagatgcatgcaaagggtaagagtgaggtgggaagagagaacatgaaaggaaactgatggatggt |
209 |
Q |
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| T |
34012079 |
aaattgagtggttagttagttatattaagggaaatgagatgcatgcaaagggtaagagtgaggtgggaagagagaacatgaaaggaaactgatggatggt |
34011980 |
T |
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| Q |
210 |
agctagcttttggagtataatgacgttgccatgcctctactctcactccacttacgtacattaatttggaactaagttatggg |
292 |
Q |
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| T |
34011979 |
agctagcttttggagtataatgacgttgccatgcctctactctcactccacttacgtacattaatttggaactaagttatggg |
34011897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 712 - 758
Target Start/End: Complemental strand, 34011441 - 34011395
Alignment:
| Q |
712 |
aagtaccttagtgcggctcaatgacaactaaataaaatgagcatggt |
758 |
Q |
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| T |
34011441 |
aagtaccttagtgcggctcaatgacaactaaattaaatgagcatggt |
34011395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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