View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_20 (Length: 397)
Name: NF15075_low_20
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 38291805 - 38291422
Alignment:
| Q |
1 |
aaaataactatagaccaaggtctacataaataaatctacacacacnnnnnnn----tcactaaaaagtgaaaatatatttattannnnnnnngcaagata |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||| |
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| T |
38291805 |
aaaataactatagaccaaggtctacataaataaatctacacacaaaaaaaaaaaaatcactaaaaagtgaaaatatatt-attattttttttgtaagata |
38291707 |
T |
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| Q |
97 |
aaaaagtgaatatatgtttactggttgaagttgcgaatataagatataaatatagata--gaattatgaaaaataaaattaaagtttagtcaaatgttcc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38291706 |
aaaaagtgaatatatgtttactggttgaagttgcgaatataagatataaatatatatatagaattatgaaaaataaaattaaagtttagtcaaatgttcc |
38291607 |
T |
|
| Q |
195 |
agaacaaaacacgttaacttaaattataatcttatcccattgcaaatttaagaagaatcacaacatcatgagttgaggattgatcaccatttggtagatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38291606 |
agaacaaaacacgttaacttaaattataatcttatcccattgcaaatttaggaagaatcacaacatcatgagttgaggattgatcaccatttggtagatg |
38291507 |
T |
|
| Q |
295 |
tcttnnnnnnnttccctccgctccaatgaagatattaatatatgcatagataatttcagaataattaaagagaaaatgagtcatag |
380 |
Q |
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|||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38291506 |
tcttaaaaaattcccctccgctctaatgaagacattaatatatgcatagataatttcagaataatt-aagagaaaatgagtcatag |
38291422 |
T |
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