View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_23 (Length: 388)
Name: NF15075_low_23
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 39150570 - 39150203
Alignment:
| Q |
18 |
cattgttagaagaaccaatcgaaaaataatattaatagatgaaaaagagatagagaaaattattctactacatattcacttacccttgcagattgaattt |
117 |
Q |
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| T |
39150570 |
cattgttagaagaaccaatcgaaaaataatattaatagatgaaaaagagatagagaaaattattctactacatattcacttacccttgcagattgaattt |
39150471 |
T |
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| Q |
118 |
ggcctatgtcaagagtcctaggctctctttcaatcgatgaagttctttgaatgggtggtaacctagccataggtgcctccattttattttttgtatgatg |
217 |
Q |
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| T |
39150470 |
ggcctatgtcaagagtcctaggctctctttcaatcgatgaagttctttgaatgggtggtaacctagccataggtgcctccattttatttttagtatgatg |
39150371 |
T |
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| Q |
218 |
agttcttctctatataacgaaaataaatataaaaagtccctcacttcacttctatatataaatcaatcgcggagttgttgctgaattgaaggaattagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39150370 |
agttcttctctatataacgaaaataaatataaaaagtccctcacttcacttctatatataaatcaatcgcggagttgttgctaaattgaaggaattagaa |
39150271 |
T |
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| Q |
318 |
tgtgaattgaatcgtgtcctttaaatata--------tatagtttggaatatttggtgaattgcctat |
377 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39150270 |
tgtgaattgaatcgtgtcctttaaatatatatatatatatagtttggaatatttggtgaattgcctat |
39150203 |
T |
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