View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15075_low_24 (Length: 376)

Name: NF15075_low_24
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15075_low_24
NF15075_low_24
[»] chr4 (5 HSPs)
chr4 (1-218)||(53371792-53372009)
chr4 (1-218)||(23010941-23011158)
chr4 (98-162)||(21604143-21604207)
chr4 (345-376)||(24995026-24995057)
chr4 (345-376)||(41236497-41236528)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-217)||(2911-3127)
[»] chr7 (5 HSPs)
chr7 (1-218)||(27117752-27117969)
chr7 (345-376)||(3434702-3434733)
chr7 (345-376)||(8080302-8080333)
chr7 (345-376)||(19329992-19330023)
chr7 (138-199)||(27118418-27118479)
[»] chr1 (9 HSPs)
chr1 (68-205)||(32239441-32239578)
chr1 (222-344)||(20030465-20030587)
chr1 (118-216)||(32240033-32240131)
chr1 (1-46)||(32239574-32239619)
chr1 (137-218)||(51165436-51165517)
chr1 (345-376)||(26274579-26274610)
chr1 (345-376)||(27564654-27564685)
chr1 (345-376)||(37649348-37649379)
chr1 (345-376)||(48716201-48716232)
[»] chr3 (8 HSPs)
chr3 (222-344)||(8756922-8757044)
chr3 (222-344)||(27984578-27984700)
chr3 (44-210)||(7266610-7266775)
chr3 (224-344)||(32568834-32568951)
chr3 (345-376)||(33644350-33644381)
chr3 (345-376)||(48587020-48587051)
chr3 (345-376)||(49607564-49607595)
chr3 (345-376)||(53982161-53982192)
[»] chr2 (7 HSPs)
chr2 (222-344)||(40864797-40864919)
chr2 (345-376)||(5574419-5574450)
chr2 (345-376)||(7465654-7465685)
chr2 (345-376)||(13438493-13438524)
chr2 (345-376)||(17473170-17473201)
chr2 (345-376)||(28381574-28381605)
chr2 (345-376)||(28863605-28863636)
[»] chr8 (3 HSPs)
chr8 (231-318)||(5375386-5375473)
chr8 (152-218)||(41763786-41763852)
chr8 (345-376)||(14548072-14548103)
[»] chr6 (1 HSPs)
chr6 (345-376)||(32869828-32869859)
[»] chr5 (2 HSPs)
chr5 (345-376)||(2740424-2740455)
chr5 (345-376)||(14831964-14831995)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 53371792 - 53372009
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  53371792 aagagaaatagttggatatggttggggtcagcgatggagaatggagaagaggagtagttgctgtgattggaggtcagggatggaattgattctctatggc 53371891  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53371892 tttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 53371991  T
Q  201 gagcaaatctgcactcca 218  Q
    ||||| ||||||||||||    
T  53371992 gagcagatctgcactcca 53372009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 23011158 - 23010941
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |    
T  23011158 aagagaaatagttggatatggttggggtcagcgatggagaatggagaagaggagtagttgctgtgattggaggtcagggatggaattgattctctatgac 23011059  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23011058 tttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccaggtaaatggacagctgcataaatg 23010959  T
Q  201 gagcaaatctgcactcca 218  Q
    ||||| ||||||||||||    
T  23010958 gagcagatctgcactcca 23010941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 21604207 - 21604143
Alignment:
Q  98 ggctttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatc 162  Q
    |||||||||||||| |||| |||||||||||||||  |||||||| ||| |||||| ||| ||||    
T  21604207 ggctttcatcaattcatgtttttaatcctagccattcaatttttatttgacacgtggcattcatc 21604143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 24995057 - 24995026
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  24995057 atgggaataaagggtgtctatgtatcattact 24995026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 41236497 - 41236528
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  41236497 atgggaataaagggtgtctatgtatcattact 41236528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2911 - 3127
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  2911 aagagaaatagttggatatggttggggtcagcgatggagaatggagaagaggagtagttgctgtgattggaggtcagggatggaattgattatctatggc 3010  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3011 tttcatcaattgatgtgtttaatcctaaccatctgatttttagttgccacgtgtcatccatcagtgaagagaatcgggtaaatggacagctgcataaatg 3110  T
Q  201 gagcaaatctgcactcc 217  Q
    ||||| |||||||||||    
T  3111 gagcagatctgcactcc 3127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27117969 - 27117752
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  27117969 aagaggaatagttggatatggttggggtcagcgatggagaaaagagaagaggagtagttgctatgattgggggtcagggatggaagtgattctctctggc 27117870  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||     
T  27117869 tttcatcaattgatgtgtttaatcctagctatcggatttttagttgccatgtgtcatccatcggtgaagagaaccgggtaaatggagaactgcataaatt 27117770  T
Q  201 gagcaaatctgcactcca 218  Q
    ||||| ||||| ||||||    
T  27117769 gagcagatctggactcca 27117752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 3434702 - 3434733
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  3434702 atgggaataaagggtgtctatgtatcattact 3434733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 8080333 - 8080302
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  8080333 atgggaataaagggtgtctatgtatcattact 8080302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 19329992 - 19330023
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  19329992 atgggaataaagggtgtctatgtatcattact 19330023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 27118418 - 27118479
Alignment:
Q  138 ttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaat 199  Q
    ||||| ||||||| ||||||||||| || || ||||| |||||||  |||||||||||||||    
T  27118418 ttttaattgccacatgtcatccatccgtaaaaagaactgggtaaacagacagctgcataaat 27118479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 32239578 - 32239441
Alignment:
Q  68 tggaggtcagggatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtga 167  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32239578 tggaggtcagagatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtga 32239479  T
Q  168 agagaaccgggtaaatggacagctgcataaatggagca 205  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  32239478 agagaactgagtaaatggacagctgcataaatggagca 32239441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 20030465 - 20030587
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcacctgcatccccta 321  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  20030465 acagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctg 20030564  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||||    
T  20030565 agcccaacgtgggtccgccactg 20030587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 32240033 - 32240131
Alignment:
Q  118 tttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatctgcactc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32240033 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcagatctgcactc 32240131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32239619 - 32239574
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggag 46  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  32239619 aagagaaatagttggatatggttggggttagcgatgaagaatggag 32239574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 51165436 - 51165517
Alignment:
Q  137 tttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatctgcactcca 218  Q
    |||||| ||||||||||||||  ||| ||||| |||||||||||| ||||||| |  | |||||||||| ||||||||||||    
T  51165436 tttttaattgccacgtgtcatgtatctgtgaaaagaaccgggtaactggacagatataaaaatggagcagatctgcactcca 51165517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 26274579 - 26274610
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  26274579 atgggaataaagggtgtctatgtatcattact 26274610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 27564685 - 27564654
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  27564685 atgggaataaagggtgtctatgtatcattact 27564654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 37649348 - 37649379
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  37649348 atgggaataaagggtgtctatgtatcattact 37649379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 48716232 - 48716201
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  48716232 atgggaataaagggtgtctatgtatcattact 48716201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 8756922 - 8757044
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcacctgcatccccta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8756922 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 8757021  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||||    
T  8757022 agcccaacgtgggtccgccactg 8757044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 27984578 - 27984700
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcacctgcatccccta 321  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27984578 acagatggttcatagttaaattttcaggggattcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 27984677  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||| ||||||||||||||    
T  27984678 agcccaacatgggtccgccactg 27984700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 7266775 - 7266610
Alignment:
Q  44 gagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctaatttttag 143  Q
    ||||||||||||||||  | ||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||  | ||||||     
T  7266775 gagaagaggagtagttattgtgattgg-ggtcagggatggaagtgcttctccatggctttcataaattgatgtttttaatcctagccatggagtttttaa 7266677  T
Q  144 ttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatct 210  Q
    |||||| || |||| |||| ||||||||||||||||||||||| || ||||||||||||||| ||||    
T  7266676 ttgccatgtatcattcatcggtgaagagaaccgggtaaatggatagatgcataaatggagcagatct 7266610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 32568951 - 32568834
Alignment:
Q  224 agagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcacctgcatcccctaag 323  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||  ||||||| |||||||||||  |    
T  32568951 agagggttcatagttaaattttcagggggttcattcaacacaaagatagaaaattaggtgcaaatataaaatttga--ggatgcagctgcatcccct-gg 32568855  T
Q  324 cccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||    
T  32568854 cccaacgtgggtccgccactg 32568834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 33644350 - 33644381
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  33644350 atgggaataaagggtgtctatgtatcattact 33644381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 48587051 - 48587020
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  48587051 atgggaataaagggtgtctatgtatcattact 48587020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 49607564 - 49607595
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  49607564 atgggaataaagggtgtctatgtatcattact 49607595  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 53982161 - 53982192
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  53982161 atgggaataaagggtgtctatgtatcattact 53982192  T

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Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 40864797 - 40864919
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcacctgcatccccta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40864797 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 40864896  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||||    
T  40864897 agcccaacgtgggtccgccactg 40864919  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 5574450 - 5574419
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  5574450 atgggaataaagggtgtctatgtatcattact 5574419  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 7465685 - 7465654
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  7465685 atgggaataaagggtgtctatgtatcattact 7465654  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 13438493 - 13438524
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  13438493 atgggaataaagggtgtctatgtatcattact 13438524  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 17473170 - 17473201
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  17473170 atgggaataaagggtgtctatgtatcattact 17473201  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 28381605 - 28381574
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  28381605 atgggaataaagggtgtctatgtatcattact 28381574  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 28863605 - 28863636
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  28863605 atgggaataaagggtgtctatgtatcattact 28863636  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 5375473 - 5375386
Alignment:
Q  231 tcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcacctgcatccc 318  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  5375473 tcatagttaaattttcagagggttcattcaagaaaaagttaaaaaattaggtccaaatatgaaatttgaggggatgcagctgcatccc 5375386  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 41763852 - 41763786
Alignment:
Q  152 tgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatctgcactcca 218  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||    
T  41763852 tgtcatccatcggtgaagagaatcggataaatggacagttgcataaatggagcagatctgcactcca 41763786  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 14548072 - 14548103
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  14548072 atgggaataaagggtgtctatgtatcattact 14548103  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 32869828 - 32869859
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  32869828 atgggaataaagggtgtctatgtatcattact 32869859  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 2740424 - 2740455
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  2740424 atgggaataaagggtgtctatgtatcattact 2740455  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 14831964 - 14831995
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  14831964 atgggaataaagggtgtctatgtatcattact 14831995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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