View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15075_low_26 (Length: 338)

Name: NF15075_low_26
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15075_low_26
NF15075_low_26
[»] chr7 (4 HSPs)
chr7 (18-292)||(34706666-34706942)
chr7 (267-326)||(13695876-13695934)
chr7 (267-326)||(13696084-13696142)
chr7 (181-322)||(3312575-3312715)
[»] chr8 (1 HSPs)
chr8 (103-286)||(40391232-40391415)
[»] scaffold0101 (1 HSPs)
scaffold0101 (163-279)||(554-668)
[»] chr6 (1 HSPs)
chr6 (271-326)||(19566892-19566947)
[»] chr3 (1 HSPs)
chr3 (143-213)||(32657326-32657394)
[»] chr4 (1 HSPs)
chr4 (181-254)||(25126318-25126392)
[»] chr1 (1 HSPs)
chr1 (143-254)||(18513905-18514016)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 34706666 - 34706942
Alignment:
Q  18 caaagcactaaaaactagttcaaggaacatatat--tattaattttacttttgcttatatatttataactcaacataaccacaattaaaccacgaattta 115  Q
    |||| ||||||||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34706666 caaaacactaaaaactagttaaaggaacatatatattattaattttacgtttgcttatatatttataactcaacataaccacaattaaaccacgaattta 34706765  T
Q  116 actcatcaacatcatgaatttagaaacaatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaaacaaagaagaaaa 215  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34706766 acacatcaacatcgtgaatttagaaacaatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaaacaaagaagaaaa 34706865  T
Q  216 acataaaccat-cactacccatgctttcatacaacccttacgataaataaacctctccccttacttctagttatgccg 292  Q
    ||||||||| | || ||| |||   ||||| ||| |||||||||||||||||||| |||||||| ||||||| |||||    
T  34706866 acataaacccttcaatactcatatattcatccaatccttacgataaataaacctc-ccccttacctctagttttgccg 34706942  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 13695876 - 13695934
Alignment:
Q  267 ctctccccttacttctagttatgccgaatagatgaatttctacggttgaatctctcccta 326  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||    
T  13695876 ctctccccttacctctagtt-tgccgaattgatgaatttctacggttgaatcactcccta 13695934  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 13696084 - 13696142
Alignment:
Q  267 ctctccccttacttctagttatgccgaatagatgaatttctacggttgaatctctcccta 326  Q
    |||||||||| | ||||||| |||||||| |||||||||||||||||||||| |||||||    
T  13696084 ctctccccttccctctagtt-tgccgaattgatgaatttctacggttgaatcactcccta 13696142  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 3312575 - 3312715
Alignment:
Q  181 aattcattaaaagattatgaaaacaaagaagaaaaacataaa-ccatcactacccatgctttcatacaacccttacgataaata-aacctctccccttac 278  Q
    |||||||||||||||  ||||||||| ||||||||||| ||| || ||||||||||    |||||||||||||||  || |||| |  ||| |||||||     
T  3312575 aattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcactacccacatattcatacaaccctta-tatgaatagagactc-ccccttat 3312672  T
Q  279 ttctagttatgccgaatagatgaatttctacggttgaatctctc 322  Q
     ||||||| |||||||| ||||| || |||||||||||||||||    
T  3312673 ctctagtt-tgccgaattgatgacttcctacggttgaatctctc 3312715  T

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Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 40391232 - 40391415
Alignment:
Q  103 aaccacgaatttaactcatcaacatcatgaatttagaaacaatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaa 202  Q
    |||||| |||||||| ||||| |||||| |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  40391232 aaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaa 40391331  T
Q  203 acaaagaagaaaaacataaa-ccatcactacccatgctttcatacaacccttacgataaataaacctctccccttacttctagtt 286  Q
    |||||||||||||||| ||| || ||||||| |||   || ||| |||||||||||| |||||| ||| |||||||| |||||||    
T  40391332 acaaagaagaaaaacacaaacccttcactactcatatgtttatataacccttacgatgaataaaactc-ccccttacctctagtt 40391415  T

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Target: scaffold0101 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 668 - 554
Alignment:
Q  163 acacaaatttaacatctcaattcattaaaagattatgaaaacaaagaagaaaaacataaa-ccatcactacccatgctttcatacaacccttacgataaa 261  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| || |||||||||||   |||||   ||||||||||| ||    
T  668 acacaaatttaacatctcaattcattaaaagattaagaaaacgaagaagaaaaacacaaacccttcactacccatatgttcat---acccttacgatgaa 572  T
Q  262 taaacctctccccttact 279  Q
    |||| ||| |||||||||    
T  571 taaaactccccccttact 554  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 19566947 - 19566892
Alignment:
Q  271 ccccttacttctagttatgccgaatagatgaatttctacggttgaatctctcccta 326  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  19566947 ccccttgcctctagttttgctgaatagatgaatttctacggttgaatctctcccta 19566892  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 32657394 - 32657326
Alignment:
Q  143 aatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaaacaaagaagaa 213  Q
    ||||||| |||| || |||| ||||||||||||||   ||||||||||||||| |||||||||||||||||    
T  32657394 aatcacaacaaccaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaaagaagaa 32657326  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 25126392 - 25126318
Alignment:
Q  181 aattcattaaaagattatgaaaacaaagaagaaaaacataaa-ccatcactacccatgctttcatacaaccctta 254  Q
    |||| |||||||||| | |||||||||||||||||||||||| || |||||||| ||   || ||||||||||||    
T  25126392 aatttattaaaagatcaagaaaacaaagaagaaaaacataaatccttcactacctatatgtttatacaaccctta 25126318  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 18514016 - 18513905
Alignment:
Q  143 aatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaaac-aaagaagaaaaacataaacc-atcactacccatgctt 240  Q
    ||||||| ||||||| || | || |||||||||||   |||| |||||||||| |||||||| ||||||||||| ||||||||  |||||||| ||   |    
T  18514016 aatcacaacaacaaattacagcataaatttaacatg--aatttattaaaagatcatgaaaacaaaagaagaaaatcataaacctttcactacctatatgt 18513919  T
Q  241 tcatacaaccctta 254  Q
    ||||||||||||||    
T  18513918 tcatacaaccctta 18513905  T

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