View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_3 (Length: 767)
Name: NF15075_low_3
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 13 - 759
Target Start/End: Original strand, 31067771 - 31068513
Alignment:
| Q |
13 |
acattattcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaacaaaattcattaatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31067771 |
acattattcatttataattttctaacagttgtatctaataaatactcattttcttcaattcaacactttacacaaatttcgtaaacaaaattcattaatc |
31067870 |
T |
|
| Q |
113 |
atatgtcaataactctatcattatattttaatattctgatattnnnnnnnncacggatcctctaaaaacttgttcctcacttgcttggcgtccatttcac |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31067871 |
----gtcaataactctatcattatattttaatattctgatattaaaaaaaacacggatcctctaaaaacttgttcctcacttgcttggcgtccatttcac |
31067966 |
T |
|
| Q |
213 |
ttaaatgaggagtcacataggtttcgaccaactcaaaattgaacgttgcaaaagggaaaaaagttaggggaatgttgnnnnnnnaataggagccgaactc |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31067967 |
ttaaatgaggagtcacataggtttcgaccaactcaaaattgaacgttgcaaaagggaaaaaagttaggggaatgttgtttttttaataggagccgaactc |
31068066 |
T |
|
| Q |
313 |
acaactagtggaaagttaggggaacaaaagtgtgtttaaacctattatttaaaaacgtcctctccctttgaatattgttttaattgcttcatttttagct |
412 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068067 |
ataactagtggaaagttaggggaacaaaagtgtgtttaaacctattatttaaaaacgtcctctccctttgaatattgttttaattgcttcatttttagct |
31068166 |
T |
|
| Q |
413 |
tctcatgaatttttaattttaagcttcatgttgcttcattttatttccattgctcttgtcaaatgaatattttttaattccnnnnnnnggattgttgctc |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31068167 |
tctcatgaatttttaattttaagcttcatgttgcttcattttatttccattgctcttgtcaaatgaatattttttaattccaaaaaaaggattgttgctc |
31068266 |
T |
|
| Q |
513 |
tttgtttcatatttgcattctcggctataacttttgcaattcattgtttgctaaccataatattctatcttcatctttcgacaaataaacaatttaaacg |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31068267 |
tttgtttcatatttgcattctcggctataacttttgcaattcattgtttgctaaccataatattctatcttcatctttcgacaaataaacaatttaaacg |
31068366 |
T |
|
| Q |
613 |
aggaaaacaaatagattaaagaaattaaagcatataagatcaagaattccatatctatgttggatcttgaaggatttttggtatgttggtttttgaatat |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068367 |
aggaaaacaaatagattaaagaaattaaagcatataagatcaagaattccatatctatgttggatcttgaaggatttttggtatgttggtttttgaatat |
31068466 |
T |
|
| Q |
713 |
ttttggtgataagattagatgttgttgttgatgatggtgtgatgatg |
759 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
31068467 |
ttttggtgataagattagatgttgttgttgatgatggtgtggtgatg |
31068513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 41491762 - 41491874
Alignment:
| Q |
452 |
tttatttccattgctcttgtcaaatgaatattttttaattccnnnnnnnggattgttgctctttgtttcatatttgcattctcggctataacttttgcaa |
551 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||| || |||||||||||| ||| ||||||| ||||| |
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| T |
41491762 |
tttatttccattgctcttgtcaaatgattattttttatttccaaaaaaagaattgttgctctttggtttgtatttgcattctgggccataacttctgcaa |
41491861 |
T |
|
| Q |
552 |
ttcattgtttgct |
564 |
Q |
| |
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||||||||||||| |
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| T |
41491862 |
ttcattgtttgct |
41491874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 4755293 - 4755403
Alignment:
| Q |
20 |
tcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaacaaaattcattaatcatatgtc |
119 |
Q |
| |
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|||||||||||||| ||| | | ||||||||||||||||| ||| | ||||||||||| | ||||||||||| |||| | || |||||||| || | || |
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| T |
4755293 |
tcatttataattttttaatattattatctaataaatactcaatttttccaactcaacacctcacacaaatttcttaaatagaactcattaattatttatc |
4755392 |
T |
|
| Q |
120 |
aataactctat |
130 |
Q |
| |
|
||||| ||||| |
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| T |
4755393 |
aataagtctat |
4755403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 30056753 - 30056808
Alignment:
| Q |
94 |
taaacaaaattcattaatcatatgtcaataactc--tatcattatattttaatatt |
147 |
Q |
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|
||||||||||||||||||| ||| |||||||||| ||||||||||||| |||||| |
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| T |
30056753 |
taaacaaaattcattaatcctatatcaataactctatatcattatatttcaatatt |
30056808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 37073808 - 37073723
Alignment:
| Q |
13 |
acattattcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaac |
98 |
Q |
| |
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|||| ||| |||||||||||| ||| | | |||||||||||| ||||| ||||| |||| |||||| | |||||||| || ||||| |
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| T |
37073808 |
acatcatttatttataattttttaatactagtatctaataaacactcaatttctgcaacccaacacctcacacaaatatcttaaac |
37073723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 36317042 - 36316970
Alignment:
| Q |
85 |
caaatttcgtaaacaaaattcattaatcatatgtcaataactct--atcattatattttaatattctgatatt |
155 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||| ||||||| ||| |||||| ||||||||||||| ||||| |
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| T |
36317042 |
caaatttcttaaacgaaactcattaatcatatatcaataattctacatcatttcattttaatattctaatatt |
36316970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 6321696 - 6321631
Alignment:
| Q |
82 |
acacaaatttcgtaaacaaaattcattaatcatatgtcaataactctatcattatattttaatatt |
147 |
Q |
| |
|
||||||||||| ||||||| || || |||| |||| ||||||||| |||||||| |||| |||||| |
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|
| T |
6321696 |
acacaaatttcttaaacaagatccactaattatatatcaataactatatcattacatttcaatatt |
6321631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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