View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_low_30 (Length: 311)
Name: NF15075_low_30
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 28753848 - 28754076
Alignment:
| Q |
54 |
aaattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
153 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28753848 |
aaattctctcattaataaaataaaggcgagttacgtacatgttttgatatgcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
28753947 |
T |
|
| Q |
154 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28753948 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgta |
28754047 |
T |
|
| Q |
254 |
tggaaactgttgataagatgagctgttgc |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28754048 |
tggaaactgttgataagatgagctgttgc |
28754076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 28739898 - 28740126
Alignment:
| Q |
65 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
164 |
Q |
| |
|
|||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28739898 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgcaaatccacaagcatcaccagcagtgaaaaacc |
28739997 |
T |
|
| Q |
165 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28739998 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
28740097 |
T |
|
| Q |
265 |
gataagatgagctgttgcggtaccacttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28740098 |
gataagatgagctgttgcggtaccacttg |
28740126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 28749840 - 28750068
Alignment:
| Q |
65 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
164 |
Q |
| |
|
|||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749840 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
28749939 |
T |
|
| Q |
165 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749940 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
28750039 |
T |
|
| Q |
265 |
gataagatgagctgttgcggtaccacttg |
293 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
28750040 |
gataagatgagctgttgctgtaccacttg |
28750068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 55 - 293
Target Start/End: Complemental strand, 39943066 - 39942828
Alignment:
| Q |
55 |
aattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagca |
154 |
Q |
| |
|
|||||| || ||||||||||||||||| || || ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
39943066 |
aattctatcattaataaaataaaggcgggtcacttacttcctttgataggcttctagaccaaatgtgggaaagtttgtaaatccacaagaatcaccagca |
39942967 |
T |
|
| Q |
155 |
gtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtat |
254 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39942966 |
gcgaaaaaccattggaagaaaccccacaagaagctgaaggagaagaactttcccagtgcttttacttgcttctttgctagtttggcaccttctgatgtat |
39942867 |
T |
|
| Q |
255 |
ggaaactgttgataagatgagctgttgcggtaccacttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39942866 |
ggaaactgttgataagatgagctgttgcggtaccacttg |
39942828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 29247219 - 29247286
Alignment:
| Q |
226 |
ctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttg |
293 |
Q |
| |
|
||||||||||||||| |||| || || ||||| |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
29247219 |
ctttgctagtttggctccttgaggagtgtggaagctgttgatgagatgagcagttgcagtaccacttg |
29247286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University