View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15075_low_31 (Length: 310)

Name: NF15075_low_31
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15075_low_31
NF15075_low_31
[»] chr6 (1 HSPs)
chr6 (20-310)||(35035285-35035580)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 35035580 - 35035285
Alignment:
Q  20 aattattataggaaaagacaaaagtctatacaaattattatnnnnnnnnnnnnnn-gacatttaaataaacacatgatagccacataaagtgtagcatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||    
T  35035580 aattattataggaaaagacaaaagtctatacaaattattataaaaataaataaaaagacatttaaataaacacatgatagccacataaagtgtagcatta 35035481  T
Q  119 cccacacggaaattattctttaaatacacac----tcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaa 214  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35035480 cccacacggaaattattctttaaatacacacacactcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaa 35035381  T
Q  215 gtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcct 310  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||        ||||| ||||||||||| |||||||||||||||    
T  35035380 gtttcaactcctttgtaacacttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcct 35035285  T

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