View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_35 (Length: 279)
Name: NF15075_low_35
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 13871401 - 13871147
Alignment:
| Q |
11 |
cacagagtctcatatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtctaaattcgttatcatagattatgtgttatttgttaacaa |
110 |
Q |
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| T |
13871401 |
cacagagtctcatatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtccaaattcgttatcatagattatgtgttatttgtcaacaa |
13871302 |
T |
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| Q |
111 |
gtgttgactttattggtaggccaaaaaacatgtgccatatgtgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgt |
210 |
Q |
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| T |
13871301 |
gtgttgactttattggtaggccaaaaaacatgtgccatatgcgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgt |
13871202 |
T |
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| Q |
211 |
ccttctaagagaacatatgtaagtttctggtcgcatccattaccctgatattact |
265 |
Q |
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| T |
13871201 |
ccttctaagagaacatatgtaagtttctggtcgcatccattaccttgatattact |
13871147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 14011526 - 14011272
Alignment:
| Q |
11 |
cacagagtctcatatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtctaaattcgttatcatagattatgtgttatttgttaacaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
14011526 |
cacagagtctcatatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtccaaattcgttatcatagattatgtgttatttgtcaacaa |
14011427 |
T |
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| Q |
111 |
gtgttgactttattggtaggccaaaaaacatgtgccatatgtgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgt |
210 |
Q |
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| T |
14011426 |
gtgttgactttattggtaggccaaaaaacatgtgccatatgcgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgt |
14011327 |
T |
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| Q |
211 |
ccttctaagagaacatatgtaagtttctggtcgcatccattaccctgatattact |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14011326 |
ccttctaagagaacatatgtaagtttctggtcgcatccattaccttgatattact |
14011272 |
T |
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