View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_38 (Length: 264)
Name: NF15075_low_38
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 2319648 - 2319457
Alignment:
| Q |
16 |
caatgttaaattgatttcacaagaggagaagatcgattcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaatt |
115 |
Q |
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| T |
2319648 |
caatgttaaattgatttcacaagaggagaagatcgattcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaatt |
2319549 |
T |
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| Q |
116 |
aaaaaactataatgttggagaagatactcggagattcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
207 |
Q |
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| T |
2319548 |
aaaaaactataatgttggagaagatactcggagattcatgaatgagagttgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
2319457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 1259402 - 1259558
Alignment:
| Q |
51 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
150 |
Q |
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| T |
1259402 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
1259501 |
T |
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| Q |
151 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
207 |
Q |
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| T |
1259502 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
1259558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 37242690 - 37242846
Alignment:
| Q |
51 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242690 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
37242789 |
T |
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| Q |
151 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37242790 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcagagctggc |
37242846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 34873273 - 34873161
Alignment:
| Q |
95 |
aaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaatgagagctgtttgagaagatctgtgtcattcaagcta |
194 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34873273 |
aaattatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaatgagagctgtttgagaagacctgtgtcattcaagcta |
34873174 |
T |
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| Q |
195 |
ttgcaaagctggc |
207 |
Q |
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||||||| ||||| |
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| T |
34873173 |
ttgcaaaactggc |
34873161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 18246655 - 18246811
Alignment:
| Q |
51 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
150 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18246655 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatgctcggagat |
18246754 |
T |
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| Q |
151 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18246755 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
18246811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 16989582 - 16989426
Alignment:
| Q |
51 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
150 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989582 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
16989483 |
T |
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| Q |
151 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
207 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
16989482 |
tcatgaatgagagctgtttgagaagatttgtgtcattcaagctattgcaaagttggc |
16989426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 16990031 - 16989980
Alignment:
| Q |
16 |
caatgttaaattgatttcacaagaggagaagatcgattcactattttagttt |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16990031 |
caatgttaaattgatttcacaagaggagaagatcgattcactattttagttt |
16989980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 31234854 - 31235010
Alignment:
| Q |
51 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31234854 |
attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat |
31234953 |
T |
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| Q |
151 |
tcatgaatgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc |
207 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
31234954 |
tcatgaatgagagctatttaagaagatctatgtcattcaagctattgcaaagctggc |
31235010 |
T |
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