View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_low_4 (Length: 599)
Name: NF15075_low_4
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 39173121 - 39172552
Alignment:
| Q |
19 |
tatagtcaacaaaagaaaattgtccagctataagaatgctaaaagtgaaactattcactgttatcatgcgtttcaaggaaatattatagtttctatcttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39173121 |
tatagtcaacaaaagaaaattgtccagctataagaatgctaaaagtgaaactattcattgttatcattcgtttcaaggaaatattatagtttctatcttt |
39173022 |
T |
|
| Q |
119 |
aggaaacccattcttttgtgcttctggttcaataccaagcttggctattagaagtctataactcaagaaaaaggacctttaaagaatatataaaaagttg |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
39173021 |
aggaaaccccttcttttgtgcttctggttcaataccgagcttggctattagaagtctataactcaataaaaaggacctttaaagactgtataaaaagttg |
39172922 |
T |
|
| Q |
219 |
aattgaacaagagtagataaagaagaaaatgaaattaattaattgtagaatgagctgagcttcagttgttgttgttttggtataccaagaacagaattaa |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39172921 |
aattgaacaggagtagataaagaagaaaatgaaattaattaattgtagaatg-----agcttcagtttttgttgttttggtataccaagaacagaattaa |
39172827 |
T |
|
| Q |
319 |
gctattggacaattgcatatttgaaatagtacattatcaaatataactctcccacctttaaaagcattaactacaatttacataaacccagctacaaatt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39172826 |
gctattggacaactgcatatttgaaatagtacattatcaaatataactctcccacc-ttaaaagcattaactacaatttacaaaaacccagctacaaatt |
39172728 |
T |
|
| Q |
419 |
caaaaacgaatatggaaatcgatttttccaattaaatcgattttaatatggaatcggcccacgactgcctatgacttcccatgagtccatgaccatacca |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39172727 |
caaaaacgaatatggaaatcgatttttccaattaaatcgattttaatatggaatcggcccacgactgcctatgacagcccatgagtccatgaccatacca |
39172628 |
T |
|
| Q |
519 |
tatttgattgttaagacagaataaataaacgtaacctctcgggtcaatccactccacctcattttcatattcttcg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39172627 |
tatttgattgttaagacagaataaataaacgtaacctctcgggtcaatccactccacctcattttcattttcttcg |
39172552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 39177023 - 39176437
Alignment:
| Q |
18 |
atatagtcaacaaaagaaaattgtccagctataagaatgctaaaagtgaaactattcactgttatcatgcgtttcaaggaaatattatagtttctatctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||| |||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
39177023 |
atatagtcaacaaaagaaaattgtccagctataagaatgttaaaagtaatagtattcattgttatcatgtgtttcaaggaaagattatagttcctatctt |
39176924 |
T |
|
| Q |
118 |
taggaaacccattcttttgtgcttctggttca-----------------ataccaagcttggctattagaagtctataactcaagaaaaag--------- |
191 |
Q |
| |
|
|||||||| | ||||||||||||||| || | ||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39176923 |
taggaaactccttcttttgtgcttctagtatatagtttaaagaaaattgataccgagcttggctattagaagtctatgactcaagaaaaagttctatgca |
39176824 |
T |
|
| Q |
192 |
---gacctttaaagaatatataaaaagttgaattgaacaagagtagataaagaagaaaatgaaattaattaattgtagaatgagctgagcttcagttgtt |
288 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| || |
|
|
| T |
39176823 |
gaagacctttaaagactgaataaaaagttgaaatgaacaagagtagataa-gaagaaaatgaaattaatt----gtagaataagctg-----cagttttt |
39176734 |
T |
|
| Q |
289 |
gttgttttggtataccaagaacagaattaagctatt-ggacaattgcatatttgaaatagtacattatcaaatataactctcccacctttaaaagcatta |
387 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
39176733 |
gttgttatggtataccaagaacagaattatgctatttggacaattccatatttgaaatagtacattgtcaaatataactctaccacctttaaaagcatta |
39176634 |
T |
|
| Q |
388 |
actacaatttacataaacccagctacaaattcaaaaacgaatatggaaatcgatttttccaattaaatcgattttaatatggaatcggcccacgactgcc |
487 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
39176633 |
actacaatttacaaaaacccagctacaaattcaaaaacgaatatggaaatcgatttttccaattaaatcgattttaatatggaat----------cagcc |
39176544 |
T |
|
| Q |
488 |
tatgacttcccatgagtccatgaccataccatatttgattgttaagacagaataaataaacgtaacctctcgggtcaatccactccacctcattttcata |
587 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39176543 |
tatgacggcccatgagtccatgaccataccatatttgattgttaagacagaataaatatacataacctctcgggtcgatccactccacctcattttcatt |
39176444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 559
Target Start/End: Original strand, 39174305 - 39174368
Alignment:
| Q |
496 |
cccatgagtccatgaccataccatatttgattgttaagacagaataaataaacgtaacctctcg |
559 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||| ||| |||||| ||| ||||||||||| |
|
|
| T |
39174305 |
cccatgagtccatcaccatactgtatttgtttgttaaaacaaaataaacaaatgtaacctctcg |
39174368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University