View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_low_41 (Length: 258)
Name: NF15075_low_41
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_41 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 2213015 - 2213243
Alignment:
| Q |
19 |
attgtagaggctttgcaaccagttataggctttaattgagcaaaaactgaaattgattgttgtcgcgcttcccattttctagatattaatttgtaaggca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2213015 |
attgtagaggctttgcaaccagttataggctttaattgagcaaaaactgaaattgattgttgtcgcgcttcccattttctagatattaatttgtaaggca |
2213114 |
T |
|
| Q |
119 |
agtgcagtttcgctgccaaacttcgcacctcaaagattttctccaactctgcaatcaactcaatggaatctttccttctccaaggctccaactttgtcca |
218 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2213115 |
actgcagtttcgctgccaaactttgcacctcaaagattttctccaactctgcaatcaa-----------ctttccttctccaaggctccaactttgtcca |
2213203 |
T |
|
| Q |
219 |
catcttcccgggtctgatttgtactcttctaacctccttt |
258 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
2213204 |
caccttcccggatccgatttgtactcttctaacctccttt |
2213243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 2200371 - 2200593
Alignment:
| Q |
19 |
attgtagaggctttgcaaccagttataggctttaattgagcaaaaactgaaattgattgttgtcgcgcttcccattttctagatattaatttgtaaggca |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
2200371 |
attgtagaggctttgcaacgagttataggctttgatggagccaaaactgaaattgattgttgccgcgcttctcattttcacgatattaatttgcaaggca |
2200470 |
T |
|
| Q |
119 |
agtgcagtttcgctgccaaacttcgcacctcaaagattttctccaactctgcaatcaactcaatggaatctttccttctccaaggctccaactttgtcca |
218 |
Q |
| |
|
||||||| ||| |||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
2200471 |
agtgcagattctttgccgaacttc-----------------tccaactctgcaatcaactcaatgtaatttttccttctccaaggctccaactttgtcta |
2200553 |
T |
|
| Q |
219 |
catcttcccgggtctgatttgtactcttctaacctccttt |
258 |
Q |
| |
|
|| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
2200554 |
caccttccaggatctgatttgtactcttctaacctccttt |
2200593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University