View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_low_42 (Length: 254)
Name: NF15075_low_42
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 21384568 - 21384349
Alignment:
| Q |
16 |
ctacaattaatattgcgttaagataaaatgatgcaattttattcgtgtatccaatttatctaaggttgggaaaaggtgcatggggcaaaatatttgtcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| || |||||||||||||||| ||||||||||| |
|
|
| T |
21384568 |
ctacaattaatattgcgttaagataaaatgatgcaattttattcgtgtgtccaaattacctaaggttgagataaggtgcatggggcaacatatttgtcac |
21384469 |
T |
|
| Q |
116 |
attgtgcaaattagaattaaaaccattcatgtcggtaagaatgtaaccattacaaatcactttcnnnnnnngaaccgtgtttaattcaaactttaatttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
21384468 |
tttgtgcaaattagaattaaaaccattcatgtcggtaagaatgtaaccattacaaatcactttcaaaaaaagaaccgtgtttaattcaaacttcaatttt |
21384369 |
T |
|
| Q |
216 |
tctttatttgttgatacaaa |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21384368 |
tctttatttgttgatacaaa |
21384349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University