View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_58 (Length: 228)
Name: NF15075_low_58
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 42984036 - 42984227
Alignment:
| Q |
18 |
agaccattttgcataaaatcatgttgatgtacaatgtgtttggtatggccttaggacatgtaaaagtacggtagaaaattatgttgtcgtaataaccatg |
117 |
Q |
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| T |
42984036 |
agaccattttgcataaaatcacgttgatgtacaatgtgtttggtatggccttaggacatgtaaaagtacggtagaaaattatgttgtcgtaataaccatg |
42984135 |
T |
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| Q |
118 |
tttttcagcttctgttttttcacgctgaaagtgcattgagaactgatatttgacttccaaacgtgttttcaaacacacaaataaattaataa |
209 |
Q |
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| T |
42984136 |
ttttccagcttctgtcttttcacgctgaaggtgcattgagaactgatatttgacttccaaacgtattttcaaacacacggataaactaataa |
42984227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 46863476 - 46863618
Alignment:
| Q |
54 |
tgtttggtatggccttaggacatgtaaaagtacggtagaaaattatgttgtcgtaataaccatgtttttcagcttctgttttttcacgctgaaagtgcat |
153 |
Q |
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| T |
46863476 |
tgtttgctatggcgttggaacatgtaaaagtacggtggaaaatcacgtttgggtagaagatatgattttcagcttctgccttttcacggtgaaagtgcat |
46863575 |
T |
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| Q |
154 |
tgagaactgatatttgacttccaaacgtgttttcaaacacaca |
196 |
Q |
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| T |
46863576 |
tggaaagtggtattggacttccaaacttgtttccaaatacaca |
46863618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 5545521 - 5545402
Alignment:
| Q |
73 |
acatgtaaaagtacggtagaaaattatgttgtcgtaataaccatgtttttcagcttctgttttttcacgctgaaagtgcattgagaactgatatttgact |
172 |
Q |
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| T |
5545521 |
acatgtaaaaacacggtagaaaatcatgttatcgtagaagccatgtttttcagcttgtgcctttttacggtaaaagtgcattg-gaagtggtattgggtt |
5545423 |
T |
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| Q |
173 |
tccaaacgtgttttcaaacac |
193 |
Q |
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| T |
5545422 |
tccaaatgtgtttccaaacac |
5545402 |
T |
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