View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_61 (Length: 209)
Name: NF15075_low_61
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 27053005 - 27053162
Alignment:
| Q |
38 |
caacaccatgattaatcttgaccttagacttagggtccaaaagatttgcttcataaattcgaatatttggcaccaaatgacagtaatatagcaagtaagg |
137 |
Q |
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| T |
27053005 |
caacaccatgatttatcttcaccttagacttagggtccaaaagattcgcttcataaattcgaatatttggcaccgaatgacagtaatatagcaagtaagg |
27053104 |
T |
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| Q |
138 |
aaacaaactttgatgacaagacactgactccgtaacgttcccaccatttatctccttt |
195 |
Q |
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| T |
27053105 |
aaacaaactttgatgacaagacactgactccataacgttcccaccatttatctccttt |
27053162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 27079164 - 27079287
Alignment:
| Q |
38 |
caacaccatgattaatcttgaccttagacttagggtccaaaagatttgcttcataaattcgaatatttggcaccaaatgacagtaatatagcaagtaagg |
137 |
Q |
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| T |
27079164 |
caacaccatgatttatcttcaccttagactcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagg |
27079263 |
T |
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| Q |
138 |
aaacaaactttgatgacaagacac |
161 |
Q |
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| T |
27079264 |
aaacaaactttggtgacatgacac |
27079287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 27065447 - 27065603
Alignment:
| Q |
38 |
caacaccatgattaatcttgaccttagacttagggtccaaaagatttgcttcataaattcgaatatttggcaccaaatgacagtaatatagcaagtaagg |
137 |
Q |
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||||||||||||||||||| ||||||| || ||||| |||| |||||||| | ||| |||||| ||| | |||||||| |||| ||| ||||| |
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| T |
27065447 |
caacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttggaaccgagtgacagtagtataacaaataagg |
27065546 |
T |
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| Q |
138 |
aaacaaactttgatgacaagacactgactccgtaacgttcccaccatttatctcctt |
194 |
Q |
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| T |
27065547 |
aaacaaactctggtgacacgatacagattcagtaacttttccaccatttatcccctt |
27065603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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