View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15075_low_8 (Length: 491)
Name: NF15075_low_8
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_8 |
 | |
|
| [»] scaffold1207 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 11156077 - 11155617
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgc |
116 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| | ||||||| |||||| |
|
|
| T |
11156077 |
caagagtagcattcatgatgttgtccttgttggtggctctaccaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgc |
11155978 |
T |
|
| Q |
117 |
aaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
216 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
11155977 |
aaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttctatattgagtggtgagtgtagtgagaa------agatttacaattgt |
11155884 |
T |
|
| Q |
217 |
cggaggtcattcctttgtcccttggattggagaaacatggggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||||| || | |||||| |||| |
|
|
| T |
11155883 |
cggaggtcattcctttgtcccttggattggagactcatggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgt |
11155784 |
T |
|
| Q |
317 |
attcaccacacatgttgacaaccaaatcaatattttaattcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttggaaaatttgtt |
416 |
Q |
| |
|
||||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11155783 |
attcaccacacatttgcacaaccaaatgaatattctaattcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttggaaaatttgtt |
11155684 |
T |
|
| Q |
417 |
ttggaaattcctccggctccggcaggtggtcctcagattaaaatcagcttccaaatcgatgatgatg |
483 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155683 |
ttggaaattcctccggctccggcaggtgttcctcagattaaaatcagcttccaaatcgatgatgatg |
11155617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 11196530 - 11196064
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgc |
116 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||||| | ||||||| |||||| |
|
|
| T |
11196530 |
caagagtagcattcatgatgttgtccttgttggcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgc |
11196431 |
T |
|
| Q |
117 |
aaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
216 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196430 |
aaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
11196331 |
T |
|
| Q |
217 |
cggaggtcattcctttgtcccttggattggagaaacatggggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||| || | |||||| |||| |
|
|
| T |
11196330 |
cggaggtcattcctttgtcccttggattggagaaacatggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgt |
11196231 |
T |
|
| Q |
317 |
attcaccacacatgttgacaaccaaatcaatattttaattcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttggaaaatttgtt |
416 |
Q |
| |
|
||||||||||||| | |||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
11196230 |
attcaccacacatttgcacaaccaaatgaatattctaattgatgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtg |
11196131 |
T |
|
| Q |
417 |
ttggaaattcctccggctccggcaggtggtcctcagattaaaatcagcttccaaatcgatgatgatg |
483 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||||| | |||| |||||||||||||||| |||| |
|
|
| T |
11196130 |
ttggaaattcctcctgctgcggcaggtgttcctcagatcataatccgcttccaaatcgatgacgatg |
11196064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 11160944 - 11160566
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgc |
116 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||| |||||| |
|
|
| T |
11160944 |
caagagtagcattcatgatgttgtccttgttggtggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgc |
11160845 |
T |
|
| Q |
117 |
aaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
216 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11160844 |
aaaagcatcaatgtcgatgaggcagtggcatatggcgctgctgtccatgcttctatattgagtggtgagcgtagtgagaaggttcaagatttactattgt |
11160745 |
T |
|
| Q |
217 |
cggaggtcattcctttgtcccttggattggagaaacatggggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||| ||||||||| | |||||| || | |||||| |||| |
|
|
| T |
11160744 |
cggaggtcattcctttgtcccttggattggagactc-gggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgt |
11160646 |
T |
|
| Q |
317 |
attcaccacacatgttgacaaccaaatcaatattttaattcatgtttatgaaggtgagaggaaaatagctagggaaaaca |
396 |
Q |
| |
|
||||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11160645 |
attcaccacacatttgcacaaccaaatgaatattctaattcatgtttatgaaggtgagaggaaaataactagggaaaaca |
11160566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 11199520 - 11199147
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgc |
116 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||| |||||| |
|
|
| T |
11199520 |
caagagtagcattcatgatgttgtccttgttggtggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgc |
11199421 |
T |
|
| Q |
117 |
aaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
216 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
11199420 |
aaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttctatattgagtggtgagtgtagtgaga------aagatttacaattgt |
11199327 |
T |
|
| Q |
217 |
cggaggtcattcctttgtcccttggattggagaaacatggggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||||| || | |||||| |||| |
|
|
| T |
11199326 |
cggaggtcattcctttgtcccttggattggagactcatggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgt |
11199227 |
T |
|
| Q |
317 |
attcaccacacatgttgacaaccaaatcaatattttaattcatgtttatgaaggtgagaggaaaatagctagggaaaaca |
396 |
Q |
| |
|
||||||||||||| | ||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11199226 |
attcaccacacatttgcacaaccacatgaatattctaattcatgtttatgaaggtgagaggaaaataactagggaaaaca |
11199147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 11241784 - 11242016
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgc |
116 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||||| |||||| |
|
|
| T |
11241784 |
caagagtagcattcatgatgttgtccttgttggtggctctattaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgc |
11241883 |
T |
|
| Q |
117 |
aaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
216 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241884 |
aaaagcatcaatgtcgatgaggctgtggcatatggcgctgttgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
11241983 |
T |
|
| Q |
217 |
cggaggtcattcctttgtcccttggattggaga |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
11241984 |
cggaggtcatttctttgtcccttggattggaga |
11242016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 11132801 - 11132375
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgc |
116 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| || ||||| |||||||||||||| |||||| | ||||||||||||||||| || ||| | |||||| |
|
|
| T |
11132801 |
caagagtagtattcatgatgttgtccttgttggcgggtctacgaggattgtaaaagtacaacaaatattgagtgatttctttgaaggaaaggagttatgc |
11132702 |
T |
|
| Q |
117 |
aaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgt |
216 |
Q |
| |
|
|||||||| ||||||||||| || |||||| ||| |||||||||||||| || ||||||| |||||| |||||||| |||||| | ||| | || | |
|
|
| T |
11132701 |
aaaagcataaatgcagatgaagctattgcatgtggtgctgctgtccatgcatcaatattgaatggtgattttagtgaaaaggttagcgttttgcgatcga |
11132602 |
T |
|
| Q |
217 |
cggaggtcattcctttgtcccttggattggagaaacatggggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgt |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| || ||| | ||| || || ||||||||| ||||||||| ||||||| | || |
|
|
| T |
11132601 |
gggaggtcattcctttatcccttggattggagaaacatgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagt |
11132502 |
T |
|
| Q |
317 |
attcaccacacatgttgacaaccaaatcaatattttaattcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttggaaaatttgtt |
416 |
Q |
| |
|
|||||| |||||| || | ||||||| ||||||||| ||||||||||| || ||||| || |||||| ||| || ||||||||||| |||||||||||| |
|
|
| T |
11132501 |
attcacaacacatcttcataaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctaggaaaatttgtt |
11132402 |
T |
|
| Q |
417 |
ttggaaattcctccggctccggcaggt |
443 |
Q |
| |
|
||||||||||| || |||||||||||| |
|
|
| T |
11132401 |
ttggaaattcccccagctccggcaggt |
11132375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 11315093 - 11315257
Alignment:
| Q |
16 |
tcaagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatg |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| | || ||| |||| |||||||| || |||| ||||||| |
|
|
| T |
11315093 |
tcaagagtgacattcatgatgttgtgcttgttggcggctctactaggattgtaaagctgcatcgacgtttaagtggtttctttggtgagaagaaattatg |
11315192 |
T |
|
| Q |
116 |
caaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtg |
180 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
11315193 |
caaaagcatcaatgctgataaggcggttgcatatggcgctgctgtccacgctgctatgttgagtg |
11315257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 11209198 - 11208959
Alignment:
| Q |
18 |
aagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttg---------------atg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
11209198 |
aagagtaacattcatgatgttgtgcttgttggcgggtctaccaggattgtaaaagtgcaacaacttttgattgatttctttggaattaaaaaaggtagtg |
11209099 |
T |
|
| Q |
103 |
ggaagcaattatgcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttca |
202 |
Q |
| |
|
||| | | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| || |||| ||| |||| |
|
|
| T |
11209098 |
ggacggagttatgtaaaagcatcaatgcagatgaggcagttgcatatggcgctgctgtccatgcttttatagcaagtggtgagatttgtgaaaagtttca |
11208999 |
T |
|
| Q |
203 |
agatttactattgtcggaggtcattcctttgtcccttgga |
242 |
Q |
| |
|
|||||| |||| ||| |||| |||||||||||||||| |
|
|
| T |
11208998 |
agatttgacattgagggaagtcaatcctttgtcccttgga |
11208959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 11275761 - 11275555
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttga------tg-------- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| | |||||| |||||||||||| || |
|
|
| T |
11275761 |
caagagtaacattcatgatgttgtgcttgttggcgggtctaccaggattgtaaaagtgcaagaccttttggttgatttctttgaaattaatgagcatagc |
11275662 |
T |
|
| Q |
103 |
-ggaagcaattatgcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttc |
201 |
Q |
| |
|
||| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||| ||| ||| |
|
|
| T |
11275661 |
aggacgaagttatgcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctatccatgcttttatattgagtggtgagctttgtgaaaagtttc |
11275562 |
T |
|
| Q |
202 |
aagattt |
208 |
Q |
| |
|
||||||| |
|
|
| T |
11275561 |
aagattt |
11275555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 11170376 - 11170137
Alignment:
| Q |
18 |
aagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttg---------------atg |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
11170376 |
aagagtaaaattcatgatgttgtgcttgttggcggctctaccaggattgtaaaagtgcaacaacgtttgattgatttctttggaattaataagggtagtg |
11170277 |
T |
|
| Q |
103 |
ggaagcaattatgcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttca |
202 |
Q |
| |
|
||| | | ||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| | || |||| ||| |||| |
|
|
| T |
11170276 |
ggacggagttatgtaaaaacatcaatgtagatgaggcggttgcatatggcgctgctgtccatgcttttatagcaagtggtgcgatttgtgaaaagtttca |
11170177 |
T |
|
| Q |
203 |
agatttactattgtcggaggtcattcctttgtcccttgga |
242 |
Q |
| |
|
|||||| |||| ||| |||| |||||||||||||||| |
|
|
| T |
11170176 |
agatttgacattgagggatgtcaatcctttgtcccttgga |
11170137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 11319803 - 11319849
Alignment:
| Q |
162 |
catgcttctatattgagtggtgagtttagtgagaaggttcaagattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
11319803 |
catgcttctatattgagtggtgagttttgtgaaaagtttcaagattt |
11319849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 11170025 - 11169976
Alignment:
| Q |
354 |
attcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgct |
403 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
11170025 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgct |
11169976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 695 - 612
Alignment:
| Q |
17 |
caagagtaacattcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttga |
100 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
695 |
caagagtaactttcatgatgttgtccttgttggcggctctacaaggattgtaaaagttcaaggccttttggttgatttctttga |
612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 586 - 546
Alignment:
| Q |
111 |
ttatgcaaaagcatcaatgcagatgaggcggttgcatatgg |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
586 |
ttatgcaaaagcatcaatgcagatgaggcggttgcatatgg |
546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 17260034 - 17259905
Alignment:
| Q |
31 |
atgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgcaaaagcatcaatgc |
130 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| |||||||| ||||| ||| |||||||| | || ||| |||||||||| |||||||| | |
|
|
| T |
17260034 |
atgatgttgtccttgttggtggatcttctaggattccgaaagtgcagcaactattgcaggatttcttcaagggtaaggaattatgcaagagcatcaaccc |
17259935 |
T |
|
| Q |
131 |
agatgaggcggttgcatatggcgctgctgt |
160 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| |
|
|
| T |
17259934 |
tgatgaggctgttgcttatggtgctgctgt |
17259905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 39985437 - 39985268
Alignment:
| Q |
33 |
gatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgcaaaagcatcaatgcag |
132 |
Q |
| |
|
|||||||| ||||| || || ||||| || ||| ||| || |||||||||||| ||||||||| | || ||| | ||||||| ||||| ||| | | |
|
|
| T |
39985437 |
gatgttgtccttgtaggaggttctaccagaattccaaaggttcaacaacttttgcaagatttctttaacggaaaggagctatgcaagagcataaatcctg |
39985338 |
T |
|
| Q |
133 |
atgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttca |
202 |
Q |
| |
|
||||||| ||||||||||| |||||||| || ||| |||| |||||||||||| | |||||||||||| |
|
|
| T |
39985337 |
atgaggctgttgcatatggtgctgctgttcaggctgctatcttgagtggtgagggcaatgagaaggttca |
39985268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 8102463 - 8102283
Alignment:
| Q |
28 |
ttcatgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgcaaaagcatcaa |
127 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||||| ||||| || ||||| ||| || ||||| |||| ||| | |||||||||||||||| |
|
|
| T |
8102463 |
ttcatgatgttgttcttgttggtggttcaactaggattcccaaagttcagcaactgttgcaagacttcttcaatggtaaggagctatgcaaaagcatcaa |
8102364 |
T |
|
| Q |
128 |
tgcagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagattt |
208 |
Q |
| |
|
| || ||||| ||||| ||||| || ||||| || ||| |||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
8102363 |
ccccgacgaggctgttgcttatggtgccgctgttcaagctgctatcttgagtggtgaaggaaatgagaaggttcaagattt |
8102283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 23596960 - 23597107
Alignment:
| Q |
31 |
atgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgcaaaagcatcaatgc |
130 |
Q |
| |
|
|||||||||| |||||||| || || ||||||||| || || |||||||||||| |||||||| |||||||| || | || || |||||||| | |
|
|
| T |
23596960 |
atgatgttgttcttgttggcggatcgactaggattcccaaggttcaacaacttttgcaagatttcttcaatgggaaggaactttgtaagagcatcaaccc |
23597059 |
T |
|
| Q |
131 |
agatgaggcggttgcatatggcgctgctgtccatgcttctatattgag |
178 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| ||| |||| ||||| |
|
|
| T |
23597060 |
tgatgaggctgttgcttatggcgctgcagtccaagctgctattttgag |
23597107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 23588107 - 23588262
Alignment:
| Q |
30 |
catgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgcaaaagcatcaatg |
129 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||| || || |||||||||||| |||||||| |||| ||| | | || || |||||||| |
|
|
| T |
23588107 |
catgatgttgttcttgttggtggatccactaggattcccaaggttcaacaacttttgcaagatttcttcaatggaaaggagctttgtaagagcatcaacc |
23588206 |
T |
|
| Q |
130 |
cagatgaggcggttgcatatggcgctgctgtccatgcttctatattgagtggtgag |
185 |
Q |
| |
|
| ||||| || ||||||||||| || || ||||| ||| |||| |||||||||||| |
|
|
| T |
23588207 |
ccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgag |
23588262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 12527978 - 12527925
Alignment:
| Q |
353 |
aattcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttgg |
406 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||| ||||||||||||||||| |
|
|
| T |
12527978 |
aattcatgtttatgagggcgagagaatgatagctagcgaaaacaacttgcttgg |
12527925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 43744610 - 43744558
Alignment:
| Q |
30 |
catgatgttgtgcttgttggtggctctactaggattgtaaaagtgcaacaact |
82 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
43744610 |
catgatgttgttcttgttggtggctcctctaggattccaaaagtacaacaact |
43744558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 15594815 - 15594678
Alignment:
| Q |
43 |
ttgttggtggctctactaggattgtaaaagtgcaacaacttttgagtgatttctttgatgggaagcaattatgcaaaagcatcaatgcagatgaggcggt |
142 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||||||| |||| ||||| || || || ||| |||| |||| |||||||| | |||||||| || |
|
|
| T |
15594815 |
ttgttggtgggtcttctaggattcccaaagtgcaacaactattgaaggattttttcgagggaaaggaattgtgcatgagcatcaaccctgatgaggctgt |
15594716 |
T |
|
| Q |
143 |
tgcatatggcgctgctgtccatgcttctatattgagtg |
180 |
Q |
| |
|
||| ||||| || |||||||| ||| || | ||||||| |
|
|
| T |
15594715 |
tgcttatggtgcagctgtccaggctgctttgttgagtg |
15594678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University