View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15075_low_9 (Length: 462)
Name: NF15075_low_9
Description: NF15075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15075_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Complemental strand, 36982994 - 36982575
Alignment:
| Q |
9 |
caagaatattaggaaaataagtaagatagaactagtagcgagttatgtacgtagcatgaactcttcagattgaagatgtgtcatgtgtctgacatcgaca |
108 |
Q |
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| T |
36982994 |
caagaatattaggaaaataagtaagatagaactagtagcgagttatgta----gcatgcactcttcagattgaagatgtgtcgtgtgtctgacatcgaca |
36982899 |
T |
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| Q |
109 |
tgaatctgacacatgtatttatttcatcagttctattttctaaaattaggac-tgatgtctatgtgctagtgtcggtctcagtgttccatagagacagtg |
207 |
Q |
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| T |
36982898 |
tgaatctgacacatgtatttatttcatcagttctattttctaaaattaggacatgatgtctatgtgctagtgtcg---------------agagacagtg |
36982814 |
T |
|
| Q |
208 |
tctatgatgaactcgaattactgaaagggacacctttcatatacttattcatatgatgaactcaattacgtaagtgtttctaatttttgaaagaacttgt |
307 |
Q |
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| T |
36982813 |
tctatgatgaactcgaattactgaaagggacacctttcatatacttattcatatgatgaactcaattacgtaagtgtttctaatttttgaaagaacttgt |
36982714 |
T |
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| Q |
308 |
ttgttaagaacaaacatacctttatccacagaacatcacaacaaagtttgcacctgagcatgtttctaaaccagctgcatcatcatgagcaaagctatat |
407 |
Q |
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| T |
36982713 |
ttgtgaagaacaaacatacctttatccacagaacatcacaacaaag-ttgcacctgagcatgtttctaaaccagctgcatcatcatgagcaaagctatat |
36982615 |
T |
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| Q |
408 |
gctgcaggacaaacttgtttaaaaatgttagagtagtttg |
447 |
Q |
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| T |
36982614 |
gctgcaggacaaacttgtttaaaaatgttagagtagtttg |
36982575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 36963794 - 36963655
Alignment:
| Q |
281 |
gtgtttctaatttttgaaagaacttgtttgttaagaac--aaacatacctttatccacagaacatcacaacaaagtttgcacctgagcatgtttctaaac |
378 |
Q |
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||||||| |||||||||||||| |||||||| ||||| ||| | ||||| |||| |||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
36963794 |
gtgtttccaatttttgaaagaaattgtttgtaaagaaagaaaaaaaaccttgatccccagaacatgacaacaaagtttgcacctaagcatgtttctaaac |
36963695 |
T |
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| Q |
379 |
cagctgcatcatcatgagcaaagctatatgctgcaggaca |
418 |
Q |
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| T |
36963694 |
ctgatgcatcatcgtgggcaaaactacatgttgtaggaca |
36963655 |
T |
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