View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_high_13 (Length: 334)
Name: NF15076_high_13
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 55929934 - 55929697
Alignment:
| Q |
19 |
tctgcagcaatcttggaaaaaatttctttttcgatagaagtgggcctcagttcaatccgatcaaaaacagaggggttcaataggtaaattccagaattga |
118 |
Q |
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| T |
55929934 |
tctgcagcaatcttgggaaaaatttctttttcgatagaagtgggcctcagttcaatccgatccaaaacagaggggttcaataggtaaattccagcattga |
55929835 |
T |
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| Q |
119 |
ttttgttaccaacaaagaatttaggtttttcaacaaatttctcaacctgccctgttgtttcctccaacacagccacaccatattttgatggctcatcgac |
218 |
Q |
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| T |
55929834 |
ttttgttaccaacaaagt-tttaggtttttcaacaaatttctcaacctgccctgctgtttcctccaacacagccacaccatattttgatggctcatcaac |
55929736 |
T |
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| Q |
219 |
ctgcacaagtagatgaaaaattatatgattggatgatct |
257 |
Q |
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| T |
55929735 |
ctgcacaagtagatgaaaaattatatgattggatgatct |
55929697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 55929670 - 55929616
Alignment:
| Q |
257 |
tatagtcttgcatatttgcaaatattttctttaacttccttagtccttacctttg |
311 |
Q |
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| T |
55929670 |
tatagtcttgcatatttgcaaatattttctttaacttccttagtccttacctttg |
55929616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 34585779 - 34585560
Alignment:
| Q |
19 |
tctgcagcaatcttggaaaaaatttctttttcgatagaagtgggcctcagttcaatccgatcaaaaacagaggggttcaataggtaaattccagaattga |
118 |
Q |
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| T |
34585779 |
tctgcagcgatctttggaaaaatttctttttcgatagaagtgggcctcagttcaattcgatccaaaacagaggggttcaataggtaaattccagcattga |
34585680 |
T |
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| Q |
119 |
ttttgttaccaacaaagaatttaggtttttcaacaaatttctcaacctgccctgttgtttcctccaacacagccacaccatattttgatggctcatcgac |
218 |
Q |
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|||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| || |
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| T |
34585679 |
ttttgttaccaacaaacaactttggtttttcaacaaatttctcaacctgccctgttgtctcctccataacaaccacaccatattttgatggctcatcaac |
34585580 |
T |
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| Q |
219 |
ctgcacaagtagatgaaaaa |
238 |
Q |
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| T |
34585579 |
ctacagaagtagacgaaaaa |
34585560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 30921345 - 30921150
Alignment:
| Q |
43 |
tctttttcgatagaagtgggcctcagttcaatccgatcaaaaacagaggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttag |
142 |
Q |
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||||| || ||||||||||| ||||||||||| |||| ||||| ||||||||||||||||| || |||| |||||||||||| |||||||| || || | |
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| T |
30921345 |
tctttctcaatagaagtgggtctcagttcaatatgatccaaaactgaggggttcaataggtagatcccagcattgattttgttgccaacaaacaacttgg |
30921246 |
T |
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| Q |
143 |
gtttttcaacaaatttctcaacctgccctgttgtttcctccaacacagccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaa |
238 |
Q |
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| T |
30921245 |
gtttctccacaaatttctcaacctgcccggtagtctcttccataacaactacaccatattttgatggctcatcaacctgcacaagtagttgaaaaa |
30921150 |
T |
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