View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15076_high_14 (Length: 333)

Name: NF15076_high_14
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15076_high_14
NF15076_high_14
[»] chr3 (13 HSPs)
chr3 (15-241)||(19768084-19768310)
chr3 (19-191)||(29199652-29199821)
chr3 (19-173)||(12572307-12572461)
chr3 (19-173)||(13548771-13548925)
chr3 (277-333)||(34250512-34250568)
chr3 (281-325)||(13769460-13769504)
chr3 (277-330)||(662615-662667)
chr3 (280-325)||(4255400-4255445)
chr3 (281-325)||(4255761-4255805)
chr3 (281-325)||(14170168-14170212)
chr3 (281-325)||(27219220-27219264)
chr3 (281-325)||(45443171-45443215)
chr3 (281-325)||(54368930-54368974)
[»] chr6 (3 HSPs)
chr6 (15-241)||(22082777-22083003)
chr6 (281-330)||(1206027-1206076)
chr6 (281-325)||(30539126-30539170)
[»] chr4 (8 HSPs)
chr4 (15-241)||(37616977-37617198)
chr4 (281-325)||(51469377-51469421)
chr4 (281-325)||(990732-990776)
chr4 (281-325)||(13254295-13254339)
chr4 (281-329)||(26943035-26943083)
chr4 (281-325)||(48843186-48843230)
chr4 (281-325)||(52214506-52214550)
chr4 (281-325)||(53740073-53740117)
[»] chr5 (5 HSPs)
chr5 (19-191)||(4351620-4351793)
chr5 (280-325)||(12595272-12595317)
chr5 (281-330)||(30588209-30588258)
chr5 (281-325)||(13843588-13843632)
chr5 (281-325)||(37995803-37995847)
[»] chr1 (4 HSPs)
chr1 (34-180)||(51389655-51389801)
chr1 (281-330)||(41590390-41590439)
chr1 (281-325)||(8520404-8520448)
chr1 (281-325)||(35926390-35926434)
[»] chr7 (10 HSPs)
chr7 (281-333)||(37272180-37272232)
chr7 (279-329)||(3973050-3973100)
chr7 (281-328)||(21033975-21034022)
chr7 (279-317)||(7135420-7135458)
chr7 (279-325)||(43168062-43168108)
chr7 (280-325)||(28909922-28909967)
chr7 (281-325)||(257436-257480)
chr7 (27-75)||(32662990-32663038)
chr7 (281-329)||(35021729-35021777)
chr7 (281-325)||(40121787-40121831)
[»] chr8 (8 HSPs)
chr8 (277-325)||(3184072-3184120)
chr8 (281-333)||(34248276-34248328)
chr8 (19-112)||(770338-770428)
chr8 (280-327)||(18905746-18905793)
chr8 (283-330)||(39590593-39590640)
chr8 (280-325)||(21653216-21653261)
chr8 (280-325)||(32931296-32931341)
chr8 (280-325)||(36997056-36997101)
[»] chr2 (9 HSPs)
chr2 (278-325)||(3977172-3977219)
chr2 (280-325)||(7877734-7877779)
chr2 (280-317)||(10849668-10849705)
chr2 (280-325)||(25441586-25441631)
chr2 (281-332)||(3976848-3976900)
chr2 (281-325)||(21214370-21214414)
chr2 (273-325)||(42768501-42768553)
chr2 (281-325)||(43169133-43169177)
chr2 (281-325)||(43195675-43195719)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 19768310 - 19768084
Alignment:
Q  15 cacagattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcgg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19768310 cacagattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcag 19768211  T
Q  115 aggnnnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccacgaagaaaaagctccctcatgttcgaacatataagcttaagt 214  Q
    |||       |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19768210 aggaaaaaaacttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagt 19768111  T
Q  215 cttggacatataagcttaagtcttctt 241  Q
    ||||||||||||||||||||| |||||    
T  19768110 cttggacatataagcttaagtgttctt 19768084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 29199821 - 29199652
Alignment:
Q  19 gattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcggaggn 118  Q
    ||||| ||||||||||||||| |||||||||||| ||||  ||||||||||||||||||||||| ||| |||| ||||||||||||||||||   ||||     
T  29199821 gattacgcaaagagtaaaattaaatgaacaaagcatatcctacaaaatggctaaacagaaacatcgaaagcaggcctgaatttgaagtagca---gagga 29199725  T
Q  119 nnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccacgaagaaaaagctccctca 191  Q
          |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  29199724 aaaaaacttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca 29199652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 12572307 - 12572461
Alignment:
Q  19 gattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcggaggn 118  Q
    |||| |||||||| ||||||||||| |||||||  |||   |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||     
T  12572307 gattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggc 12572406  T
Q  119 nnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccac 173  Q
          ||||||||||||||||||| ||||| | ||||||||||| ||| |||||    
T  12572407 aaaaaacttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 12572461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 13548771 - 13548925
Alignment:
Q  19 gattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcggaggn 118  Q
    |||| |||||||| ||||||||||| |||||||  |||   |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||     
T  13548771 gattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggc 13548870  T
Q  119 nnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccac 173  Q
          ||||||||||||||||||| ||||| | ||||||||||| ||| |||||    
T  13548871 aaaaaacttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 13548925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 34250568 - 34250512
Alignment:
Q  277 tttttgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcgaca 333  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  34250568 tttttgttggaaattccgccttaattgcggtcagctcctagccgcctaattgcgaca 34250512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 13769504 - 13769460
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||    
T  13769504 tgttggaaattccgctttaattgcggtccgcccctagtcgcctaa 13769460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 662615 - 662667
Alignment:
Q  277 tttttgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcg 330  Q
    ||||||||||||||||||| |  |||||||||||| ||||| ||||||||||||    
T  662615 tttttgttggaaattccgccta-attgcggtccgcccctagtcgcctaattgcg 662667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 4255400 - 4255445
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||    
T  4255400 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 4255445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 4255761 - 4255805
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  4255761 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 4255805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 14170212 - 14170168
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||| |||||| |||||||||| |||| |||||||||||||    
T  14170212 tgttggaagttccgcctttattgcggcccgcccctagccgcctaa 14170168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 27219220 - 27219264
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  27219220 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 27219264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 45443171 - 45443215
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  45443171 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 45443215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 54368930 - 54368974
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  54368930 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 54368974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 22083003 - 22082777
Alignment:
Q  15 cacagattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  22083003 cacagattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcgg 22082904  T
Q  115 aggnnnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccacgaagaaaaagctccctcatgttcgaacatataagcttaagt 214  Q
    ||        |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22082903 agaaaaaaaacttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagt 22082804  T
Q  215 cttggacatataagcttaagtcttctt 241  Q
    |||||||||||||||||||||||||||    
T  22082803 cttggacatataagcttaagtcttctt 22082777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 1206076 - 1206027
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcg 330  Q
    |||||||||||| || || |||||||||||| ||||||||||||||||||    
T  1206076 tgttggaaattctgccttcattgcggtccgcccctagccgcctaattgcg 1206027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 30539126 - 30539170
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||||    
T  30539126 tgttggaaattccgcctttattgcggtccgcccctagtcgcctaa 30539170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 37616977 - 37617198
Alignment:
Q  15 cacagattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcgg 114  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  37616977 cacaaattaggcaaagagtaaaattgaatgaaaaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacct-----tgaagtagcagcgg 37617071  T
Q  115 aggnnnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccacgaagaaaaagctccctcatgttcgaacatataagcttaagt 214  Q
    |||       |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37617072 aggaaaaaaacttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagt 37617171  T
Q  215 cttggacatataagcttaagtcttctt 241  Q
    |||||||||||||||||||||||||||    
T  37617172 cttggacatataagcttaagtcttctt 37617198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 51469377 - 51469421
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||||    
T  51469377 tgttggaaattccgcctttattgcggtccgcccctagtcgcctaa 51469421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 990732 - 990776
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  990732 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 990776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 13254295 - 13254339
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| |||||||||||| || ||||| |||||||    
T  13254295 tgttggaaattccgcctttattgcggtctgcccctagtcgcctaa 13254339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 26943083 - 26943035
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgc 329  Q
    ||||||||||||||| |  ||| |||||||| |||||||||||||||||    
T  26943083 tgttggaaattccgcctacatttcggtccgcccctagccgcctaattgc 26943035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 48843230 - 48843186
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| ||||||||||||| | ||||| |||||||    
T  48843230 tgttggaaattccgcctttattgcggtccacccctagtcgcctaa 48843186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 52214506 - 52214550
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  52214506 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 52214550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 53740073 - 53740117
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  53740073 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 53740117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 4351793 - 4351620
Alignment:
Q  19 gattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcggaggn 118  Q
    |||| |||||||| ||||||||||| |||||||  |||   |||||||||||||| ||||| || |||||||||||| ||||||||||||||||| |||     
T  4351793 gattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaatcgaaggcagacctaaatttgaagtagcagcgcagga 4351694  T
Q  119 nnnnnncttacataaacaaaacacataatgcagtgtaacacacaccgacagccacg-aagaaaaagctccctca 191  Q
          ||||||||||||||||| | ||||| | ||||||||||| ||| |||||| || ||||||||||||||    
T  4351693 acaaaacttacataaacaaaacaaacaatgccgcgtaacacacactgactgccacgaaaaaaaaagctccctca 4351620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 12595317 - 12595272
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||    
T  12595317 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 12595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 30588258 - 30588209
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcg 330  Q
    ||||||||||||||| || |||||||||||| ||| |||| |||||||||    
T  30588258 tgttggaaattccgccttaattgcggtccgccccttgccggctaattgcg 30588209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 13843588 - 13843632
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  13843588 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 13843632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 37995847 - 37995803
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| |||||||||||| || ||||| |||||||    
T  37995847 tgttggaaattccgcctttattgcggtctgcccctagtcgcctaa 37995803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 51389655 - 51389801
Alignment:
Q  34 aaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcggaggnnnnnnncttacataa 133  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||||   ||||||||| |||| ||||||||||||||  ||        ||||||||    
T  51389655 aaaattgaacgaacaaagtctatcgcacaaaacggctaaacagaaacaccaaaggcagacttgaaattgaagtagcagcgcgggaaaaaaaattacataa 51389754  T
Q  134 acaaaacacataatgcagtgtaacacacaccgacagccacgaagaaa 180  Q
    ||||| |||| || ||||  ||||| ||||||| |||||| ||||||    
T  51389755 acaaaccacacaacgcagcataacatacaccgatagccacaaagaaa 51389801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 41590439 - 41590390
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcg 330  Q
    ||||| ||||||||| || |||||||||||| ||||||||||||||||||    
T  41590439 tgttgaaaattccgccttcattgcggtccgcacctagccgcctaattgcg 41590390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 8520448 - 8520404
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||    
T  8520448 tgttggaaattccgctttaattgcggtccgcccctagtcgcctaa 8520404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 35926434 - 35926390
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  35926434 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 35926390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 37272232 - 37272180
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcgaca 333  Q
    ||||||||||||||| ||||||||||||| | ||||| |||||||||||||||    
T  37272232 tgttggaaattccgcctttattgcggtccacccctagtcgcctaattgcgaca 37272180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 3973050 - 3973100
Alignment:
Q  279 tttgttggaaattccgcttttattgcggtccgctcctagccgcctaattgc 329  Q
    ||||||||||||||||| || |||||||||| | |||||||||||||||||    
T  3973050 tttgttggaaattccgccttcattgcggtccacccctagccgcctaattgc 3973100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 21034022 - 21033975
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattg 328  Q
    ||||||||||||||| || |||||||||||| ||||||| ||||||||    
T  21034022 tgttggaaattccgccttcattgcggtccgcccctagccacctaattg 21033975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 7135458 - 7135420
Alignment:
Q  279 tttgttggaaattccgcttttattgcggtccgctcctag 317  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  7135458 tttgttggaaattccgctttaattgcggtccgcccctag 7135420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 43168108 - 43168062
Alignment:
Q  279 tttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||||| || |||||||||||| ||||| |||||||    
T  43168108 tttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 43168062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 28909922 - 28909967
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||| ||||||| ||||||| ||||| |||||||    
T  28909922 ttgttggaaattccgcctttattgtggtccgcccctagtcgcctaa 28909967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 257480 - 257436
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  257480 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 257436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 32663038 - 32662990
Alignment:
Q  27 aaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaaca 75  Q
    ||||||||||| ||||||||||||  |||||| |||||| |||||||||    
T  32663038 aaagagtaaaactgaatgaacaaactctatcgtacaaaacggctaaaca 32662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 35021777 - 35021729
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgc 329  Q
    |||||||||| | ||||| ||||| |||||| |||||||||||||||||    
T  35021777 tgttggaaatcctgctttcattgcagtccgcccctagccgcctaattgc 35021729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 40121831 - 40121787
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  40121831 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 40121787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 3184120 - 3184072
Alignment:
Q  277 tttttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||| ||||||||| ||||||||||||||| ||||| |||||||    
T  3184120 tttttgttgtaaattccgcctttattgcggtccgcccctagtcgcctaa 3184072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 34248276 - 34248328
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaattgcgaca 333  Q
    ||||||||||||||| ||||||||  ||||| ||||| |||||||||||||||    
T  34248276 tgttggaaattccgcctttattgcaatccgcccctagtcgcctaattgcgaca 34248328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 770428 - 770338
Alignment:
Q  19 gattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagc 112  Q
    ||||||||||| |||||||||||||  |||||| ||||||    ||| |||||||||||||||   ||||||||  |||| |||||||||||||    
T  770428 gattaggcaaatagtaaaattgaatagacaaagtctatcg---taaacggctaaacagaaacaccaaaggcagaattgaaattgaagtagcagc 770338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 18905746 - 18905793
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaatt 327  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||||    
T  18905746 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaatt 18905793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 39590593 - 39590640
Alignment:
Q  283 ttggaaattccgcttttattgcggtccgctcctagccgcctaattgcg 330  Q
    |||||||||| || | ||||||||||||| ||||||||||||||||||    
T  39590593 ttggaaattctgcctctattgcggtccgcccctagccgcctaattgcg 39590640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 21653216 - 21653261
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||    
T  21653216 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 21653261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 32931296 - 32931341
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||    
T  32931296 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 32931341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 36997056 - 36997101
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||    
T  36997056 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 36997101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 3977219 - 3977172
Alignment:
Q  278 ttttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||||||| || |||||||||||| ||||| |||||||    
T  3977219 ttttgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 3977172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 7877734 - 7877779
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||||||| |||||||||||  ||||| |||||||    
T  7877734 ttgttggaaattccgctttaattgcggtccgtccctagtcgcctaa 7877779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 10849705 - 10849668
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctag 317  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  10849705 ttgttggaaattccgcctttattgcggtccgcccctag 10849668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 25441586 - 25441631
Alignment:
Q  280 ttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||||||||||||| | ||||||||||||||| ||||| |||||||    
T  25441586 ttgttggaaattccacctttattgcggtccgcccctagtcgcctaa 25441631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 3976900 - 3976848
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgccta-attgcgac 332  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||| ||||||||    
T  3976900 tgttggaaattccgctttaattgcgatccgcccctagtcgcctacattgcgac 3976848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 21214414 - 21214370
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  21214414 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 21214370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 42768553 - 42768501
Alignment:
Q  273 aatatttttgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    |||| |||||||||||||||||| || |||||||| ||| ||||| |||||||    
T  42768553 aatagttttgttggaaattccgccttaattgcggttcgcccctagtcgcctaa 42768501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 43169133 - 43169177
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  43169133 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 43169177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 43195675 - 43195719
Alignment:
Q  281 tgttggaaattccgcttttattgcggtccgctcctagccgcctaa 325  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||    
T  43195675 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaa 43195719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University