View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_high_15 (Length: 294)
Name: NF15076_high_15
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 41337209 - 41336958
Alignment:
| Q |
18 |
aaatttactaaagaactccagaaatcgaaacagtacctacgatatgccaacaataagatcaaaataacataaattttatcttcttatccttcataagcca |
117 |
Q |
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| T |
41337209 |
aaatttactaaagaactccagaaatcgaaacagtacctacgatatgccaacaataagatcaaaataacataaattttatcttcttatccttcataagcca |
41337110 |
T |
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| Q |
118 |
tattaatattaatatatacatcaaaataatcaagtttgtcacctcaagtggtccaacaaattcattgttgtaaagattaaataagtataggactaaaatt |
217 |
Q |
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| T |
41337109 |
tattaatattaatatatacatcaaaataatcaagtttgtcacctcaagtggtccaacaaattcattgttgtaaagattaaataagtataggactaaaatt |
41337010 |
T |
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| Q |
218 |
tccaacgcataagttgaaaagagtccactcttagaacccaagagacgactct |
269 |
Q |
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| T |
41337009 |
tccaacgcataagttgaaaagagtccactcttagaacccaagagacgactct |
41336958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 36135729 - 36135526
Alignment:
| Q |
66 |
aacaataagatcaaaataacataaattttatcttcttatccttcataagccatattaatattaatatatacatcaaaataatcaagtttgtcacctcaag |
165 |
Q |
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||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36135729 |
aacaataggatcaaaataacataaatttaattttcttattcttcataagccatattaatgttaatatatacatcaaaataatcaagtttgtcacctcaaa |
36135630 |
T |
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| Q |
166 |
tggtccaacaaattcattgttgtaaagattaaataagtataggactaaaatttccaacgcataagttgaaaagagtccactcttagaacccaagagacga |
265 |
Q |
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| T |
36135629 |
tggtccaacaaattcattgttgtaaagattaaatatgtagaggactaaaatttccaacacataagttgaaaagagtccactcttagaacccaagagacga |
36135530 |
T |
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| Q |
266 |
ctct |
269 |
Q |
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|||| |
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| T |
36135529 |
ctct |
36135526 |
T |
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