View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15076_high_18 (Length: 244)
Name: NF15076_high_18
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_high_18 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 3532108 - 3531877
Alignment:
| Q |
13 |
gtaatgaatggattgaatgataaggctggatttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatgg |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3532108 |
gtaatgaatggattgaatgatagggctggatttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatgg |
3532009 |
T |
|
| Q |
113 |
ataacaagaatcaaagattcttatcttgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattag |
212 |
Q |
| |
|
|| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3532008 |
atgacaagaatcaaagattcttgtcatgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattag |
3531909 |
T |
|
| Q |
213 |
agaaaaggaaagtaatgtgagtgagcattatg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3531908 |
agaaaaggaaagtaatgtgagtgagcattatg |
3531877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 3527669 - 3527444
Alignment:
| Q |
25 |
ttgaatgataaggctggatttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggataacaagaatc |
124 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||| ||||||||| |
|
|
| T |
3527669 |
ttgaatgataaggcagggtttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtgctgacttgactgctattgatgacaagaatc |
3527570 |
T |
|
| Q |
125 |
aaa------------gattcttatcttgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattag |
212 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3527569 |
aaacattcaatcaaagattcttgtcatgtatgttagcttatcttgctggggttgacttggattgggctttatggactgcacaaggttcttactatattag |
3527470 |
T |
|
| Q |
213 |
agaaaaggaaagtaatgtgagtgagc |
238 |
Q |
| |
|
||| || |||||||||| |||||||| |
|
|
| T |
3527469 |
agataaagaaagtaatgcgagtgagc |
3527444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 3549389 - 3549158
Alignment:
| Q |
13 |
gtaatgaatggattgaatgataaggctggatttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatgg |
112 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||| | |
|
|
| T |
3549389 |
gtaatgaatggattgaatgacaaggcagggtttctcatgagtggttctaaccctaatccattggttatgactgaatttggtatggacatggaaaatatag |
3549290 |
T |
|
| Q |
113 |
ataacaagaatcaaagattcttatcttgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattag |
212 |
Q |
| |
|
|| || | ||||| |||| || || ||||| || |||||||||| ||| ||||| || ||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3549289 |
atgaccaaaatcagagatatttgtcatgtattttggcttatcttggtggagtggatttagattgggctttgtgggctgcacaaggttcttactatattag |
3549190 |
T |
|
| Q |
213 |
agaaaaggaaagtaatgtgagtgagcattatg |
244 |
Q |
| |
|
|||||| |||| || |||||| || ||||||| |
|
|
| T |
3549189 |
agaaaaagaaaatattgtgagggaacattatg |
3549158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 3554968 - 3554756
Alignment:
| Q |
25 |
ttgaatgataaggctggatttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggataacaagaatc |
124 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| | | ||| |||| |
|
|
| T |
3554968 |
ttgaatgataaggcagggtttctcatgagtggttctaaccctaaaccattggttatgagtgaatttggtatcaacatggaaaataagactgacatgaatg |
3554869 |
T |
|
| Q |
125 |
aaagattcttatcttgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaag |
224 |
Q |
| |
|
||| |||||| ||||||||||| || ||||||| || ||||| ||||||||||| || ||| ||||||||||| |||||||||| ||| |||| |||| |
|
|
| T |
3554868 |
aaaaattcttgtcttgtatgttggcatatcttgtaggtgtggatttggattgggcattgtgggctgcacaaggtgcttactatataagaaaaaatgaaat |
3554769 |
T |
|
| Q |
225 |
taatgtgagtgag |
237 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
3554768 |
tattgtgagtgag |
3554756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University