View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_high_8 (Length: 396)
Name: NF15076_high_8
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 14604447 - 14604616
Alignment:
| Q |
17 |
attcttacttcctacaattgtaattgtatttacatgactttatgatctctttctttcctgtcaaatttccaccactttggtactcttttatttcttctct |
116 |
Q |
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| T |
14604447 |
attcttacttcctacaattgtaattgtatgtacatgactttattatctctttctttcctgtcaaatttccaccactttggtactcttttatttcttctct |
14604546 |
T |
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| Q |
117 |
gtatacattcttctatctttttggttatgaaccttcttacttataatcgttgttaatctctctatagctt |
186 |
Q |
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| T |
14604547 |
gtatacattcttctatctttttggttatgaaccttcttacttacaatcgttgttaatctctctatagctt |
14604616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 32618475 - 32618303
Alignment:
| Q |
17 |
attcttacttcctacaattgtaattgtatttacatgactttatgatctctttctttcctgtcaaatttccaccactttggtactcttttatttcttctct |
116 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618475 |
attcttactttctacaattgtaattgtatgtacatgactttattatctctttctttcctgtcaaatttccaccactttggtactcttttatttcttctct |
32618376 |
T |
|
| Q |
117 |
gtatacattcttctatctttttggttatgaaccttcttacttataatcgttgttaatctctctatagcttctt |
189 |
Q |
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| T |
32618375 |
gtatacactcttctatcttttttgttatgaaccttcttacttacaatcgttgttaatctctctatagcttctt |
32618303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 32618216 - 32618114
Alignment:
| Q |
276 |
agtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtttagttttataatataatatcgtacacttcttttttcccttttgttttgatt |
375 |
Q |
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| T |
32618216 |
agtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtttagttttataatataatatcgtaca---cttttttcgcttttgttttgatt |
32618120 |
T |
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| Q |
376 |
aaaagt |
381 |
Q |
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|||||| |
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| T |
32618119 |
aaaagt |
32618114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 14604738 - 14604798
Alignment:
| Q |
319 |
ttagtttagttttataatataatatcgtacacttcttttttcccttttgttttgattaaaa |
379 |
Q |
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| T |
14604738 |
ttagtttagttttataatataatatcgtacacttcttttttcccttttgttttgattaaaa |
14604798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Original strand, 14604709 - 14604738
Alignment:
| Q |
276 |
agtttaatttgtttgtgaatgaagatgcct |
305 |
Q |
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| T |
14604709 |
agtttaatttgtttgtgaatgaagatgcct |
14604738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 51271005 - 51270905
Alignment:
| Q |
276 |
agtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtttagttttataatataatatcgtacacttcttttttcccttttgttttgatt |
375 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
51271005 |
agtttaatttgtttatgaatgaagatgcctcaaaattttgatgttagtttagttttataacat-----cgtacacttattttttcccttttgttttgatt |
51270911 |
T |
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| Q |
376 |
aaaagt |
381 |
Q |
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||||| |
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| T |
51270910 |
caaagt |
51270905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 25897563 - 25897648
Alignment:
| Q |
97 |
tactcttttatttcttctctgtatacattcttctatctttttggttatgaaccttcttacttataatcgttgttaatctctctata |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |||| ||||||||||||| |
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| T |
25897563 |
tactcttttatttcttctctgtatacattcttctatctctttggttatgaagcttcttacttaaaattgttgctaatctctctata |
25897648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 22774498 - 22774461
Alignment:
| Q |
276 |
agtttaatttgtttgtgaatgaagatgcctcaaaattt |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
22774498 |
agtttaatttgtttatgaatgaagatgcctcaaaattt |
22774461 |
T |
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