View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_1 (Length: 542)
Name: NF15076_low_1
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Complemental strand, 33806531 - 33806020
Alignment:
| Q |
18 |
aataataccccttgtgctcataagctcctaagatggagttgaaatctcccataaagcaccagggaatggggtggttcgtttgtaaagattgcagggactg |
117 |
Q |
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| T |
33806531 |
aataatgccccttgtgcttataagctcctaagatggagttgaaatctcccataaagcaccagggaatggggtagttcgtttgtaaagattgcagggactg |
33806432 |
T |
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| Q |
118 |
ccacagttctcttctcttcaaatagcatgttgaggcatatacatcagaaattccccaggtaatattgttatagtcaatagtaaaggaaactagttggtca |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806431 |
ccacagttctcttctcttcaaataacatgttgaggcatatacatcagaaattccacaggtaatattgttatagtcaatagtaaaggaaactagttggtca |
33806332 |
T |
|
| Q |
218 |
gtaatctctaaaatcttagggttaaggtttgaagtacacatgcaccaaagattaggcttcaaattgtttctaatattagaaccgaaaagtttgccaccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
33806331 |
gtaatctctaaaatcttagggttaaggtttgaagtacacaggcaccaaagattaggcttcaaattttttctaatattagaaccgaaaagtttgtcaccat |
33806232 |
T |
|
| Q |
318 |
gtctactaaaccaaactctcggaagagaatcatgctccaaccatggttcactaataaaacaaattttggtttattaacatcaagaaacctcttaagagct |
417 |
Q |
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| T |
33806231 |
gtctactaaaccaaactctaggaagagaatcatgctccaaccatggttcactaataaaacaaaatttggtttattaacatcaagaaacctcttaagagct |
33806132 |
T |
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| Q |
418 |
aatctagtggaggcgttagctaaaccccttacattctagaaaaaactctttattgtgaaggatttgttttaccaatccttgatctagttgcatatttgtt |
517 |
Q |
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| T |
33806131 |
aatctagtgggggcgttagctaaaccccttacattccagaaaaaactctttattgtgaaggatttgttttaccaatccttgatctagttgcatatttgtt |
33806032 |
T |
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| Q |
518 |
gtttgctgatct |
529 |
Q |
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| T |
33806031 |
gtttgctgatct |
33806020 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 11411153 - 11411201
Alignment:
| Q |
30 |
tgtgctcataagctcctaagatggagttgaaatctcccataaagcacca |
78 |
Q |
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| T |
11411153 |
tgtgctcatgagctcctagaatagagttgaaatctcccataaaacacca |
11411201 |
T |
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