View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_11 (Length: 352)
Name: NF15076_low_11
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 10297085 - 10296750
Alignment:
| Q |
3 |
cacagatttaccggttaaagaatcacactcacagaaccaatcttttacaaggatttacattatgatttagcgggcgagtctttgcacaatgataaggttg |
102 |
Q |
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| T |
10297085 |
cacagatttaccggttaaagaatcacactcacagaaccaatcttttacaaggatttacattaagatttagcgggcgagtctttgcacaattataaggttg |
10296986 |
T |
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| Q |
103 |
gtgtcttgtgatctagaagtcacacattcaaattataaaaaccacctctctgcttgtagagataagaccgtgcacatttacttttccctgactccactcg |
202 |
Q |
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| T |
10296985 |
gtgtcttgtgatctagaagtcacacattcaaattataaaaacaacctctctgcttgtagagataagaccgtgcacatttacttttccctgactccactcg |
10296886 |
T |
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| Q |
203 |
cttggctgaaggctcgtacactaggccgtcctttatcgacattctatgattcatgccccgaaaatatattacctctatggtgtgaacttttttcatgaat |
302 |
Q |
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| T |
10296885 |
cttggctgaaggctcgtacactaggccgtcctttatcgacattctatgattcatgccccgaaaatatattacctctatggtgtgaacttttttcatgaat |
10296786 |
T |
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| Q |
303 |
aataagtggttcagagatccaagagtcgtgagaagt |
338 |
Q |
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| T |
10296785 |
aataagtggttcagagatccaagagtcgtgagaagt |
10296750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 10288556 - 10288378
Alignment:
| Q |
15 |
ggttaaagaatcacactcacagaaccaatcttttacaagg-atttacatt--atgatttagcgggcg---agtctttgcacaatgataaggttggtgtct |
108 |
Q |
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| T |
10288556 |
ggttaaagaaacacactcacataaccaatcttttacaaggcatttacattttatgatttagagggccgcaagtcgttgcacaatgattaggttggtgtcc |
10288457 |
T |
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| Q |
109 |
tgtgatctagaagtcacacattcaaattataaaaaccacctctctgcttgtagagataagaccgtgcacatttactttt |
187 |
Q |
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| T |
10288456 |
tgtgatctagaagtcacatgtccaaatcataaaaacaacttatccgcttgcagagataagacagtgtacatttactttt |
10288378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 10288268 - 10288194
Alignment:
| Q |
264 |
aaatatattacctctatggtgtgaacttttttcatgaataataagtggttcagagatccaagagtcgtgagaagt |
338 |
Q |
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| T |
10288268 |
aaatatatcacctctatggtgtgcacttttttcctgaataataagtggttcagaggtcccagagacatgagaagt |
10288194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 10304210 - 10304134
Alignment:
| Q |
258 |
ccccgaaaatatattacctctatggtgtgaacttttttcatgaataataagtggttcagagatccaagagtcgtgagaag |
337 |
Q |
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| T |
10304210 |
ccccggaaatatatgatctctttggtgtgcacttttttcatga---ataagtggttcagaaacccaagagtcatgagaag |
10304134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 10304425 - 10304367
Alignment:
| Q |
77 |
cgagtctttgcacaatgataaggttggtgtcttgtgatctagaagtcacacattcaaat |
135 |
Q |
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| T |
10304425 |
cgagcctttgtacaattacaaggtttatgtcttgtgatctagaaatcacacattcaaat |
10304367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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