View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15076_low_12 (Length: 344)
Name: NF15076_low_12
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 8185528 - 8185219
Alignment:
| Q |
19 |
caaaggtgattacatactgaattatgcatttttcacacattgtagattattcaagccctagcaagaagattaattgctattcatccaaacatccctaaga |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8185528 |
caaagatgattacatactgaattatgcatttttcacacattgtagattattcaagccctagcaagaagattaattgctattcatccaaacatccctaaga |
8185429 |
T |
|
| Q |
119 |
agatcatatctaacaggagattcactttgaatttctctcgtcttcatattcgattttgttgaaaccctcgaggacgaggaatcgccaaaaaatattaaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8185428 |
agatcatatctaacaggagattcacttggaatttctctcgtcttcatattcgattttgttgaaaccctcgaggacgaggaattgccaaaaaatattaaag |
8185329 |
T |
|
| Q |
219 |
ataatggtgacttcaaatcattgagttcatcatcactgctatatgacttcctaacaacagaagatttgtttcttcttagcggagatttgcttccaatctc |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8185328 |
ataatggtgactccaaatcattgagttcatcatcactgctatatgacttcctaacaacagaagatttgtttcttcttagctgagatttgcttccaatctc |
8185229 |
T |
|
| Q |
319 |
tccgagaatg |
328 |
Q |
| |
|
|||||||||| |
|
|
| T |
8185228 |
tccgagaatg |
8185219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University